ramithuh / diff-evol-tree-searchLinks
We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original representation itself, thus requiring no prior training data.
☆20Updated 2 years ago
Alternatives and similar repositories for diff-evol-tree-search
Users that are interested in diff-evol-tree-search are comparing it to the libraries listed below
Sorting:
- Fast and accurate protein structure prediction☆56Updated 10 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆23Updated 3 weeks ago
- ☆31Updated last year
- ☆44Updated last year
- Python package to manage protein structures and their annotations☆45Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆31Updated 2 years ago
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 3 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- ☆23Updated 2 years ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆28Updated 9 months ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆26Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 6 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 8 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆38Updated 3 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- Machine learning-driven antibody design☆62Updated 2 years ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- ☆74Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Graph Network for protein-protein interface including language model features☆33Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆24Updated 6 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆15Updated last week
- ☆11Updated 4 years ago
- ☆16Updated 3 months ago
- Deciphering protein evolution and fitness landscapes with latent space models☆35Updated 4 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- ☆47Updated last month
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago