RoniGurvich / PeptrieverView external linksLinks
Bi-Encoder approach for large-scale protein-peptide binding search
☆12Jun 14, 2024Updated last year
Alternatives and similar repositories for Peptriever
Users that are interested in Peptriever are comparing it to the libraries listed below
Sorting:
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- Pharmacophore Elucidation with Convolutional Neural Networks and Reinforcement Learning☆16Apr 7, 2025Updated 10 months ago
- ☆34Dec 15, 2023Updated 2 years ago
- Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions☆18Nov 28, 2023Updated 2 years ago
- Tree-Invent: A novel molecular generative model constrained with topological tree☆13Jul 26, 2023Updated 2 years ago
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- ☆16Dec 2, 2025Updated 2 months ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated last year
- A tutorial for Streamlined Alchemical Free Energy Perturbations with NAMD☆15Mar 20, 2025Updated 10 months ago
- ☆14Nov 20, 2024Updated last year
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆12Mar 21, 2024Updated last year
- ☆12Apr 4, 2025Updated 10 months ago
- ☆40Feb 26, 2023Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- ☆15Dec 4, 2023Updated 2 years ago
- DeepCoSI: a Structure-based Deep Graph Learning Network Method for Covalent Binding Site Identification.☆14Oct 22, 2023Updated 2 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆16Jul 25, 2023Updated 2 years ago
- ☆18Jul 3, 2024Updated last year
- Interface-aware molecular generative framework for protein-protein interaction modulators☆18Dec 22, 2024Updated last year
- ☆15Apr 14, 2023Updated 2 years ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- ☆22Mar 28, 2024Updated last year
- Multi_CycGT: A DL-Based Multimodal Model for Membrane Permeability Prediction of Cyclic Peptides☆19Dec 24, 2024Updated last year
- Multiscale Simulation Tool for Backmapping☆22Feb 7, 2026Updated last week
- ☆21Jul 25, 2024Updated last year
- code for IDR binding paper 2025☆67Feb 15, 2025Updated last year
- MHC-peptide class II interaction prediction, binding, presentation☆22Mar 16, 2022Updated 3 years ago
- ML-guided visual inspection for molecular docking☆21Jun 3, 2025Updated 8 months ago
- Extract the PAE & pLDDT value of Alphafold2 from .pkl to .png, .csv & .pdb file.☆22Jan 2, 2022Updated 4 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21May 16, 2022Updated 3 years ago
- Deep learning tools for peptide substrate prediction and generation☆36Nov 20, 2025Updated 2 months ago
- ☆25Dec 6, 2025Updated 2 months ago
- Use AutoDock for Ligand-based Virtual Screening☆22Aug 18, 2024Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Sep 9, 2025Updated 5 months ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆27Jul 7, 2023Updated 2 years ago
- ☆29Oct 29, 2023Updated 2 years ago
- Scaffold decoration and fragment linking with chemical language models and RL☆26Mar 24, 2025Updated 10 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆170Dec 24, 2023Updated 2 years ago
- Plugin for folding sequences directly in PyMOL☆27Aug 5, 2025Updated 6 months ago