RoniGurvich / PeptrieverLinks
Bi-Encoder approach for large-scale protein-peptide binding search
☆11Updated 11 months ago
Alternatives and similar repositories for Peptriever
Users that are interested in Peptriever are comparing it to the libraries listed below
Sorting:
- SE(3) diffusion models for generating CDR loops☆10Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆23Updated last year
- Interface-aware molecular generative framework for protein-protein interaction modulators☆14Updated 5 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated 2 weeks ago
- InteractionDrawer is a JavaScript library for the drawing of highly interactive 2D ligand interaction diagrams.☆22Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Updated 3 months ago
- GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.☆9Updated 2 years ago
- Making Protein folding accessible to all!☆22Updated last year
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆11Updated 9 months ago
- ☆37Updated 2 months ago
- DeepCoSI: a Structure-based Deep Graph Learning Network Method for Covalent Binding Site Identification.☆12Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆32Updated last year
- Energy minimization post-processing used in PoseBusters☆11Updated 2 months ago
- Use AutoDock for Ligand-based Virtual Screening☆21Updated 9 months ago
- ☆26Updated last month
- Code for deep learning guided design of dynamic proteins☆25Updated 10 months ago
- ☆12Updated 4 months ago
- ☆13Updated last year
- ☆13Updated 2 months ago
- Code for ApoDock☆20Updated 2 months ago
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆15Updated last year
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆11Updated last month
- Cryptic pocket prediction using AlphaFold 2☆22Updated 2 years ago
- EvolveX, a de novo antibody computational design pipeline.☆11Updated 5 months ago
- Building more accurate protein structures from backbone torsion angles☆14Updated 2 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆14Updated 3 months ago
- ☆21Updated 3 months ago
- Generative diverse protein backbones by protein language model☆32Updated 5 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated last year