astrazeneca-cgr-publications / PEACOK
Phenome Exome Association and Correlation Of Key phenotypes
☆24Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for PEACOK
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆17Updated 2 weeks ago
- Statistical fine-mapping pipeline in FinnGen☆26Updated last week
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated 9 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆31Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- Configs and descriptions of circos plots created on FUMA web application☆11Updated 6 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 5 months ago
- ☆42Updated 3 weeks ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- software package for integrative genetic association analysis☆33Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last year
- Co-expression network management based on WGCNA + k-means☆17Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆19Updated last year
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Cross-population fine-mapping☆27Updated 3 weeks ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- ☆11Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆23Updated this week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 2 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- ☆18Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago