huangyh09 / brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
☆42Updated 8 months ago
Alternatives and similar repositories for brie:
Users that are interested in brie are comparing it to the libraries listed below
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated last week
- ☆37Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆31Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- ☆33Updated 5 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆19Updated 2 years ago
- ☆17Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- ☆15Updated 8 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆35Updated 3 months ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- ☆47Updated last month
- ☆36Updated 2 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated this week
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago