huangyh09 / brieLinks
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
☆42Updated last year
Alternatives and similar repositories for brie
Users that are interested in brie are comparing it to the libraries listed below
Sorting:
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆53Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆58Updated 11 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆33Updated 6 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆53Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆34Updated 6 years ago
- ☆49Updated last year
- ☆47Updated 6 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last month
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆38Updated 2 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- Robust Allele Specific Quantification and quality controL