huangyh09 / brieLinks
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
☆42Updated last year
Alternatives and similar repositories for brie
Users that are interested in brie are comparing it to the libraries listed below
Sorting:
- ☆34Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- ☆59Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆47Updated 5 years ago
- ☆47Updated 10 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- ☆34Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- ☆51Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- ☆88Updated 4 years ago