iRNA-COSI / APAeval
Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
☆13Updated last year
Alternatives and similar repositories for APAeval:
Users that are interested in APAeval are comparing it to the libraries listed below
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆30Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- This repository contains the source code for the tappAS application. See README for details.☆16Updated last year
- ☆28Updated 4 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆68Updated 4 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- ☆21Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- ☆25Updated 2 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆35Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Long read to rMATS☆31Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end process…☆8Updated 3 years ago
- GWAS and rare variants tests at high speed using regenie☆13Updated 4 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Master of Pores 2☆23Updated 4 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated 11 months ago
- Annotating principal splice isoforms☆14Updated 6 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago