Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
☆16Jan 11, 2024Updated 2 years ago
Alternatives and similar repositories for APAeval
Users that are interested in APAeval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated 5 months ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Jun 22, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Feature extraction algorithm for genomic data☆15Sep 28, 2021Updated 4 years ago
- ☆10May 31, 2022Updated 4 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated 11 months ago
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22May 19, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNA-seq Quantification of Alternative Polyadenylation☆53Mar 21, 2026Updated 3 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆230Updated this week
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Jan 7, 2020Updated 6 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 11 months ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated 2 months ago
- RefDNN: a reference drug based neural network for more accurate prediction of anticancer drug resistance (Scientific Reports)☆14Apr 21, 2022Updated 4 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Jun 11, 2026Updated 3 weeks ago
- Using Astronomical Software in one Step☆13Jun 19, 2026Updated 2 weeks ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- ☆15Apr 8, 2026Updated 2 months ago
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 2 months ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆17Mar 1, 2022Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆274Jun 20, 2026Updated 2 weeks ago
- ☆10Sep 20, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Welcome page and service overview☆18Mar 29, 2023Updated 3 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51May 26, 2026Updated last month
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆33Jun 12, 2026Updated 3 weeks ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- Mapping of GENCODE gene annotation set files to older assembies☆14Apr 16, 2026Updated 2 months ago