iRNA-COSI / APAeval
Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
☆13Updated last year
Alternatives and similar repositories for APAeval:
Users that are interested in APAeval are comparing it to the libraries listed below
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 9 months ago
- Useful tools for working with Salmon output☆36Updated 4 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆27Updated last year
- Long read to rMATS☆31Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- Feature-rich Python implementation of the tximport package for gene count estimation.☆32Updated 2 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated last year
- Chromatin segmentation in R☆19Updated 6 years ago
- ☆25Updated 9 months ago
- Nascent Transcription Processing Pipeline☆18Updated this week
- Master of Pores 2☆23Updated last month
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 8 months ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- ☆15Updated 5 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆41Updated 3 weeks ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆64Updated last month
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Annotating principal splice isoforms☆14Updated 3 months ago
- ☆10Updated this week
- Two pass alignment for long reads☆21Updated 3 years ago