Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
☆14Jan 11, 2024Updated 2 years ago
Alternatives and similar repositories for APAeval
Users that are interested in APAeval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated last month
- Interactive and integrated analysis of multiplexed tissue microarrays☆14Mar 16, 2026Updated last week
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- Gencode UTR fix☆16Jan 11, 2023Updated 3 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Feature extraction algorithm for genomic data☆15Sep 28, 2021Updated 4 years ago
- ☆10May 31, 2022Updated 3 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated 8 months ago
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22May 19, 2022Updated 3 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆205Updated this week
- RNA-seq Quantification of Alternative Polyadenylation☆51Updated this week
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Jan 7, 2020Updated 6 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 8 months ago
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- RefDNN: a reference drug based neural network for more accurate prediction of anticancer drug resistance (Scientific Reports)☆14Apr 21, 2022Updated 3 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Dec 18, 2025Updated 3 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Using Astronomical Software in one Step☆13Sep 10, 2025Updated 6 months ago
- ☆20Sep 28, 2019Updated 6 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- ☆15Mar 10, 2026Updated 2 weeks ago
- splicing and feature maps for RBPs☆25Mar 11, 2026Updated 2 weeks ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆256Mar 12, 2026Updated last week
- ☆10Sep 20, 2022Updated 3 years ago
- Welcome page and service overview☆17Mar 29, 2023Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51Jan 18, 2023Updated 3 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆32Mar 4, 2026Updated 2 weeks ago
- Mapping of GENCODE gene annotation set files to older assembies☆13Aug 7, 2023Updated 2 years ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Mar 1, 2022Updated 4 years ago
- uPU, nnPU and PN learning with Extra Trees classifier.☆19Dec 2, 2024Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Mar 12, 2026Updated last week