iRNA-COSI / APAeval
Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
☆13Updated last year
Alternatives and similar repositories for APAeval:
Users that are interested in APAeval are comparing it to the libraries listed below
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 10 months ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- supplementary tables and files☆10Updated last year
- ☆26Updated 11 months ago
- interactive plots for differential expression analysis☆32Updated 2 weeks ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆29Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆34Updated 2 weeks ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- ☆28Updated 3 months ago
- ☆15Updated 5 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 4 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 9 months ago
- chia pet analysis software☆25Updated 6 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆24Updated last week
- Long read to rMATS☆31Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated this week
- GWAS and rare variants tests at high speed using regenie☆13Updated 2 months ago
- ☆26Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 weeks ago
- Version II of Mandalorion☆32Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago