iRNA-COSI / APAevalLinks
Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
☆13Updated last year
Alternatives and similar repositories for APAeval
Users that are interested in APAeval are comparing it to the libraries listed below
Sorting:
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- ☆20Updated 2 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- Transcription Factor Enrichment Analysis☆35Updated last month
- Comprehensive Human Expressed SequenceS☆18Updated last month
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆29Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 2 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- Nascent Transcription Processing Pipeline☆20Updated 3 weeks ago
- ☆26Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- ☆17Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- isoCirc☆10Updated last year
- interactive plots for differential expression analysis☆33Updated last month
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- A comprehensive toolkit for mutational signature analysis☆40Updated last year