Functional Associations using Variational Autoencoders
☆42Mar 16, 2026Updated 2 months ago
Alternatives and similar repositories for fava
Users that are interested in fava are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆61Updated this week
- ☆24Mar 1, 2023Updated 3 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated 4 months ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆21Jun 12, 2023Updated 2 years ago
- Registry for scverse ecosystem packages☆37May 11, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Network annotation visualization☆18May 21, 2025Updated 11 months ago
- SPACE: STRING proteins as complementary embeddings☆39Apr 10, 2026Updated last month
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆12Oct 23, 2024Updated last year
- A graphical interface for sklearn classification to introduce machine learning to biologists☆14Mar 19, 2025Updated last year
- Builds a knowledge graph from the [COVID-19 Open Research Dataset (CORD-19)](https://pages.semanticscholar.org/coronavirus-research) data…☆16Mar 27, 2020Updated 6 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆32Apr 13, 2026Updated last month
- Non-parametric density inference for single-cell analysis.☆74Apr 10, 2026Updated last month
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- ☆15Apr 7, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆370Updated this week
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆44Apr 19, 2026Updated last month
- Scientific Computing in Python, a practical and ultimate tutorials☆14Mar 7, 2023Updated 3 years ago
- Tutorials for learning scverse☆21May 11, 2026Updated last week
- 🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.☆40Sep 29, 2025Updated 7 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Supporting data files and code for the publication by Shilts et al.☆31Aug 28, 2022Updated 3 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 3 years ago
- ☆26Feb 25, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- CADEE: Computer-Aided Directed Evolution of Enzymes☆18Nov 7, 2023Updated 2 years ago
- Single-cell perturbation analysis☆314Updated this week
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- Automatically annotate cell types, consistently across samples.☆21Updated this week
- An R package built on RMarkdown to create biosketches (e.g. for NIH)☆22Feb 25, 2022Updated 4 years ago
- R package for microbial pangenomics☆24Apr 12, 2022Updated 4 years ago
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.☆14Jan 11, 2023Updated 3 years ago
- Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers☆17May 7, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- Provides easy access to Thermo Discoverer platform results☆19Apr 22, 2026Updated 3 weeks ago
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated last month
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 27, 2026Updated 3 weeks ago
- Serialize to and from R and JSON, JavaScript Object Notation☆25Mar 26, 2025Updated last year