mikelkou / favaLinks
Functional Associations using Variational Autoencoders
☆40Updated 3 weeks ago
Alternatives and similar repositories for fava
Users that are interested in fava are comparing it to the libraries listed below
Sorting:
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 5 months ago
- Builds a PEP from SRA or GEO accessions☆53Updated 3 months ago
- ☆44Updated last year
- Code and documentation for the curation of cellxgene datasets☆49Updated last week
- Explore and download data from the recount3 project☆36Updated last month
- ☆37Updated 7 months ago
- Multi-omics factor analysis v2☆53Updated last week
- CAusal Reasoning for Network Identification with integer VALue programming in R☆60Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 7 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆61Updated last year
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆29Updated 11 months ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- ☆56Updated 5 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- Annotated multivariate observation data in R☆50Updated 4 months ago
- Unified knowledge-driven network inference from omics data☆85Updated last week
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Signac☆25Updated 2 years ago
- metadata and data from the database☆41Updated 5 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆60Updated 4 years ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week
- Universal Single-Cell Genomics Preprocessing package☆42Updated this week
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆66Updated last year
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆77Updated 3 weeks ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- machine-readable file format for genomic library sequence and structure☆123Updated last month
- Scripts for using scanpy☆38Updated last week
- bioinformatics plotting and tools☆59Updated last year
- Multi-modal single cell analysis pipelines☆59Updated last week