Alternatives and similar repositories for fava:

Users that are interested in fava are comparing it to the libraries listed below

• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆41Updated 4 months ago
• cellatlas / human
  ☆42Updated 2 months ago
• elvanov / MOGAMUN
  ☆12Updated 3 years ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆39Updated this week
• rajewsky-lab / spacemake
  ☆39Updated last month
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 2 months ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆116Updated this week
• lilab-bcb / harmony-pytorch
  ☆50Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 5 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆39Updated 2 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆46Updated 4 months ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 4 years ago
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 2 years ago
• lcmmichielsen / scHPL
  ☆34Updated 8 months ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆54Updated 4 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆77Updated 2 months ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆31Updated last month
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆32Updated last month
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆53Updated 7 months ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆97Updated last year
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆57Updated 10 months ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆33Updated this week
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆51Updated 5 months ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆28Updated last year
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆23Updated 2 years ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆22Updated last month
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆39Updated last week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆81Updated 3 months ago