Alternatives and similar repositories for fava

Users that are interested in fava are comparing it to the libraries listed below

• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆57Updated 7 months ago
• cellatlas / human
  ☆44Updated last year
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆50Updated this week
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆37Updated 3 months ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated 2 years ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆54Updated 2 months ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated last month
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆38Updated 2 months ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆30Updated last year
• lcmmichielsen / scHPL
  ☆37Updated 9 months ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆26Updated 8 months ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 2 weeks ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆34Updated 9 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆57Updated last year
• elvanov / MOGAMUN
  ☆12Updated 5 months ago
• lilab-bcb / harmony-pytorch
  ☆60Updated 7 months ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆63Updated last year
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 3 years ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆83Updated last month
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• regulatory-genomics / precellar
  Universal Single-Cell Genomics Preprocessing package
  ☆45Updated this week
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆67Updated last month
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆68Updated 2 years ago
• oscar-franzen / PanglaoDB
  metadata and data from the database
  ☆41Updated 5 years ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆114Updated last week
• rajewsky-lab / spacemake
  ☆48Updated last week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆90Updated 2 weeks ago