jlanga / smskLinks
Snakemake skeleton - Build workflows with Snakemake
☆19Updated last year
Alternatives and similar repositories for smsk
Users that are interested in smsk are comparing it to the libraries listed below
Sorting:
- ☆19Updated 8 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Ebola virus surveillance☆16Updated 9 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- ☆13Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- blast, shmlast☆22Updated 4 years ago
- Pipelines to do MinION sequencing of Zika virus☆16Updated 6 years ago
- reference free variant assembly☆34Updated 2 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Updated 10 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 8 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Nanopore desc☆18Updated 9 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Reproducible Phylogenomics☆22Updated 9 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Updated 2 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago