Snakemake skeleton - Build workflows with Snakemake
☆19May 17, 2024Updated last year
Alternatives and similar repositories for smsk
Users that are interested in smsk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 7 years ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- This is a template for the static site generator Jekyll. based on Jekyll's default theme by jglovier. It adds functionality that targets …☆19Mar 22, 2015Updated 11 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 5 months ago
- TAXnomic Profile Aggregation and STAndardisation☆43Updated this week
- IPython running in a docker container. This image can be used to integrate IPython into Galaxy☆17Mar 15, 2016Updated 10 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Aug 16, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Annotating principal splice isoforms☆18Nov 20, 2025Updated 5 months ago
- Bioinformatics pipelines for Resolwe☆19Mar 24, 2026Updated last month
- Prediction pipeline to generate prognosis predictors for Ebola Virus Disease☆12Feb 22, 2016Updated 10 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 7 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Feb 20, 2014Updated 12 years ago
- Docker for Bioinformatics☆20Mar 27, 2026Updated last month
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Apr 24, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Dec 29, 2021Updated 4 years ago
- ☆14Aug 21, 2021Updated 4 years ago
- Four-in-one value pack of host-virus association data☆27Jun 30, 2022Updated 3 years ago
- Course material for the Madrid ASDM class on text mining (C09)☆12Jul 5, 2019Updated 6 years ago
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆22Nov 13, 2025Updated 5 months ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated last month
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Nov 15, 2018Updated 7 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Ebola virus surveillance☆15Aug 28, 2016Updated 9 years ago
- An experimental repo for common snakemake rules and workflows☆46Mar 17, 2015Updated 11 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- Metagenomic Analysis in Real Time☆29Apr 14, 2026Updated 3 weeks ago
- Utilities for turning characters into various cases: camelCase, Title Case, lower case, upper case, etc.☆15May 18, 2020Updated 5 years ago