MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
☆44Feb 20, 2025Updated last year
Alternatives and similar repositories for MeDuSA
Users that are interested in MeDuSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Mar 19, 2025Updated last year
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.☆203Updated this week
- ☆21Jul 25, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆35Mar 31, 2026Updated last week
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆17Nov 13, 2024Updated last year
- GCTA software☆107Jul 9, 2025Updated 9 months ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆19Nov 18, 2025Updated 4 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Apr 3, 2026Updated last week
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 2 months ago
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆22May 4, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Sep 1, 2023Updated 2 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆148Jan 14, 2026Updated 2 months ago
- A TUI application for monitoring and managing SLURM jobs.☆97Nov 24, 2025Updated 4 months ago
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 7 months ago
- ☆10Dec 2, 2025Updated 4 months ago
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 5 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated 3 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Example jobs for popular applications on HCC clusters.☆20Feb 10, 2026Updated 2 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Quality control steps for GWAS☆26Aug 11, 2023Updated 2 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- scAB detects multiresolution cell states with clinical significance☆22Nov 14, 2022Updated 3 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆233Mar 17, 2026Updated 3 weeks ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 8 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆32Feb 28, 2022Updated 4 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year