JianYang-Lab / MeDuSALinks
MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
☆43Updated 4 months ago
Alternatives and similar repositories for MeDuSA
Users that are interested in MeDuSA are comparing it to the libraries listed below
Sorting:
- identifying disease critical cell types and programs from single cell RNAseq☆56Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆74Updated 2 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 10 months ago
- ☆20Updated 4 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆48Updated 7 months ago
- scWGCNA☆61Updated 2 years ago
- ☆31Updated last year
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- Spatial omics analysis toolbox☆14Updated 11 months ago
- Repository for Cibersortx☆60Updated 4 years ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆63Updated 5 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- Create cisTarget databases☆52Updated last week
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆55Updated 5 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- ☆56Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆66Updated 8 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- Draw phylogenetic trees of tumor evolution☆79Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆55Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆47Updated 5 months ago
- ☆47Updated 5 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last week