JianYang-Lab / MeDuSALinks
MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
☆43Updated 7 months ago
Alternatives and similar repositories for MeDuSA
Users that are interested in MeDuSA are comparing it to the libraries listed below
Sorting:
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 5 months ago
- ☆39Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- scWGCNA☆61Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- Code repository for single cell RNA-seq☆37Updated 4 years ago
- ☆57Updated last year
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆51Updated 11 months ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- ☆38Updated 3 months ago
- ☆58Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆21Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated this week
- ☆53Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Spatial omics analysis toolbox☆15Updated last year
- ☆29Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆69Updated 8 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆37Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Spatial Cellular Estimator for Tumors☆57Updated last month
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- Integration of gut cell atlases☆27Updated 7 months ago
- ☆31Updated 2 years ago