JianYang-Lab / MeDuSALinks
MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
☆43Updated 9 months ago
Alternatives and similar repositories for MeDuSA
Users that are interested in MeDuSA are comparing it to the libraries listed below
Sorting:
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆79Updated 6 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆51Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- Spatial omics analysis toolbox☆16Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 3 years ago
- ☆57Updated last year
- ☆40Updated 2 years ago
- ☆60Updated last year
- iterative clustering pipeline of big single cell datasets.☆34Updated 2 months ago
- ☆29Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- ☆32Updated 2 years ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- ☆60Updated 2 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆80Updated last week
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- ☆59Updated 4 months ago
- Whole mouse brain snATAC seq analysis☆27Updated 7 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- ☆19Updated last year
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 3 months ago