JianYang-Lab / MeDuSALinks
MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
☆43Updated 3 months ago
Alternatives and similar repositories for MeDuSA
Users that are interested in MeDuSA are comparing it to the libraries listed below
Sorting:
- identifying disease critical cell types and programs from single cell RNAseq☆56Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆74Updated last month
- ☆31Updated last year
- scWGCNA☆60Updated 2 years ago
- ☆55Updated last year
- R package for pathway analysis in scRNA-seq data☆73Updated 9 months ago
- Create cisTarget databases☆50Updated 4 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆63Updated 4 months ago
- Pan-Cancer Single Cell Classifier☆71Updated last year
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆54Updated 5 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- ☆66Updated 11 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- ☆40Updated 6 months ago
- Repository for Cibersortx☆59Updated 4 years ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 9 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆51Updated 2 years ago
- ☆15Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 7 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- ☆80Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆53Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆38Updated last year
- ☆20Updated 4 years ago