kuijjerlab / retriever
Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
☆14Updated 3 years ago
Alternatives and similar repositories for retriever:
Users that are interested in retriever are comparing it to the libraries listed below
- Using BCR and expression for sequence embedding☆21Updated this week
- Explore the cancer relevance of your gene list☆50Updated last week
- ☆12Updated 9 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Course Materials for Genomics Data Mining☆22Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆42Updated 4 months ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆20Updated 4 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- single cell Gene co-Expression Network Analysis☆9Updated 2 years ago
- ☆36Updated 7 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆57Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated last week
- ConsensusTME Gene Sets and R Script☆39Updated 9 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 9 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated 11 months ago
- ☆17Updated 9 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- ☆29Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆71Updated 10 months ago
- ☆26Updated 4 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated this week