A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics studies
☆25May 23, 2026Updated last month
Alternatives and similar repositories for FastCCC
Users that are interested in FastCCC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jun 11, 2023Updated 3 years ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 7 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Apr 3, 2026Updated 3 months ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A deep model infers gene regulation networks from scRNA-seq data.☆12Jul 1, 2026Updated 2 weeks ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆19Jan 16, 2026Updated 6 months ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆15Sep 23, 2025Updated 9 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆136May 5, 2025Updated last year
- ☆19May 25, 2026Updated last month
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆46Feb 19, 2026Updated 5 months ago
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- ☆17Jul 13, 2024Updated 2 years ago
- ImageJ macro for microglia morphology analysis☆18Jun 10, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆18Jan 23, 2026Updated 5 months ago
- ☆59Jan 2, 2024Updated 2 years ago
- A computational framework☆18Jun 1, 2026Updated last month
- ☆18Nov 24, 2024Updated last year
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Methods to discover gene programs on single-cell data☆197Jun 5, 2026Updated last month
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆29May 4, 2026Updated 2 months ago
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- ☆11Jul 8, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆26Jun 9, 2026Updated last month
- ☆27Oct 25, 2023Updated 2 years ago
- ☆46May 4, 2024Updated 2 years ago
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆107Jul 13, 2026Updated last week
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆51Jul 9, 2026Updated last week
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 5 months ago
- An integrated package to process diploid Hi-C data☆17Dec 9, 2021Updated 4 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cell age determination by scATAC-seq and bulk-ATAC-seq