constantinpape / elfLinks
Utils and convenience functions for large-scale bio-image analysis.
☆60Updated last month
Alternatives and similar repositories for elf
Users that are interested in elf are comparing it to the libraries listed below
Sorting:
- Transformer-based cell tracking for live-cell microscopy☆123Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 11 months ago
- 3D shape analysis using deep learning☆29Updated 4 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆55Updated 2 months ago
- StarDist plugin for napari☆38Updated last year
- GPU-accelerated general purpose image processing and image analysis in napari☆36Updated 9 months ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated last month
- Tools for distributed alignment of massive images☆92Updated last week
- A template repo used to make new napari plugins☆31Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- ☆49Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Light microscopy simulation in python.☆43Updated last week
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated last week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆28Updated this week
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Affinity based segmentation algorithms and tools☆10Updated 8 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Tools for handling FIB-SEM data and annotations☆22Updated 10 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 9 months ago
- ☆33Updated 9 months ago
- A napari plugin for making animations☆95Updated last week
- Optimize image processing workflows in napari☆17Updated 9 months ago
- MorphoFeatures code and data☆22Updated 2 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Updated 4 years ago
- Read and write ImageJ ROI format.☆84Updated last week