constantinpape / elf
Utils and convenience functions for large-scale bio-image analysis.
☆48Updated last month
Related projects ⓘ
Alternatives and complementary repositories for elf
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated last year
- Affinity based segmentation algorithms and tools☆9Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆27Updated this week
- ☆52Updated 2 weeks ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆16Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Distributed segmentation for bio-image-analysis☆36Updated 4 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Optimize image processing workflows in napari☆17Updated 2 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated 4 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- Tools for handling FIB-SEM data and annotations☆21Updated 2 months ago
- 🌈☆52Updated last year
- MorphoFeatures code and data☆18Updated last year
- Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth☆25Updated this week
- MultiModal Big Image Data Sharing and Exploration☆14Updated last year
- 3D shape analysis using deep learning☆21Updated last year
- A deep-learning library for N2V and friends☆30Updated this week
- Tools for distributed alignment of massive images☆75Updated last week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated this week
- ☆21Updated 2 months ago
- ☆22Updated last month
- GPU-accelerated general purpose image processing and image analysis in napari☆34Updated 3 weeks ago
- StarDist plugin for napari☆36Updated 2 months ago
- A library to facilitate machine learning on multi-dimensional images.☆78Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆28Updated this week
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year