constantinpape / elfLinks
Utils and convenience functions for large-scale bio-image analysis.
☆57Updated last month
Alternatives and similar repositories for elf
Users that are interested in elf are comparing it to the libraries listed below
Sorting:
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- Multi-Object Tracker using Integer Linear Equations☆36Updated 3 weeks ago
- 3D shape analysis using deep learning☆24Updated last year
- Affinity based segmentation algorithms and tools☆10Updated 2 months ago
- A template repo used to make new napari plugins☆26Updated this week
- Transformer-based cell tracking for live-cell microscopy☆76Updated last month
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Tools for handling FIB-SEM data and annotations☆22Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 2 months ago
- ☆39Updated last week
- StarDist plugin for napari☆40Updated 10 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- MorphoFeatures code and data☆21Updated 2 years ago
- Tools for distributed alignment of massive images☆85Updated 3 weeks ago
- Optimize image processing workflows in napari☆18Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆19Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 8 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Particle tracking by solving linear assignment problem.☆53Updated last month
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆23Updated 2 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week
- ☆28Updated 2 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year