constantinpape / elfLinks
Utils and convenience functions for large-scale bio-image analysis.
☆58Updated 3 months ago
Alternatives and similar repositories for elf
Users that are interested in elf are comparing it to the libraries listed below
Sorting:
- StarDist plugin for napari☆39Updated last year
- Transformer-based cell tracking for live-cell microscopy☆109Updated this week
- Multi-Object Tracker using Integer Linear Equations☆38Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 9 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 6 months ago
- 3D shape analysis using deep learning☆28Updated last month
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated 7 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- A napari plugin for making animations☆90Updated last month
- Optimize image processing workflows in napari☆17Updated 6 months ago
- A template repo used to make new napari plugins☆28Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 6 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 6 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆91Updated 2 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆24Updated 6 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 8 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- Affinity based segmentation algorithms and tools☆10Updated 6 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆34Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated last month
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Particle tracking by solving linear assignment problem.☆60Updated 2 weeks ago
- ☆49Updated last week
- ☆33Updated 6 months ago
- Tools for handling FIB-SEM data and annotations☆22Updated 7 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆20Updated 2 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 6 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago