constantinpape / elf
Utils and convenience functions for large-scale bio-image analysis.
☆52Updated 3 weeks ago
Alternatives and similar repositories for elf:
Users that are interested in elf are comparing it to the libraries listed below
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆29Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 weeks ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆59Updated this week
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- Tools for distributed alignment of massive images☆80Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- StarDist plugin for napari☆37Updated 6 months ago
- MorphoFeatures code and data☆20Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 weeks ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- ☆59Updated last week
- ☆23Updated 5 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated last month
- Tools for handling FIB-SEM data and annotations☆21Updated 5 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 4 months ago
- Distributed segmentation for bio-image-analysis☆36Updated 7 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated last month
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- A napari plugin for clustering objects according to their properties.☆82Updated 2 weeks ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Easy Volumetric Segmentation with Deep Learning☆23Updated last week