A Cytoscape app for importing KGML(KEGG pathway XML)
☆25Mar 8, 2025Updated 11 months ago
Alternatives and similar repositories for KEGGscape
Users that are interested in KEGGscape are comparing it to the libraries listed below
Sorting:
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Feb 24, 2022Updated 4 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆14Jun 12, 2023Updated 2 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Nov 8, 2017Updated 8 years ago
- Wessim: Whole Exome Sequencing SIMulator using in silico exome capture☆15Aug 18, 2020Updated 5 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- Simple visualisation tool for sequences' similarity in bioinformatics☆13Apr 12, 2018Updated 7 years ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Algorithms to compute DNA complexity☆35May 24, 2022Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- String search using the Burrows-Wheeler transform☆19Dec 15, 2019Updated 6 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Apr 4, 2022Updated 3 years ago
- ☆21Jul 12, 2016Updated 9 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Jul 22, 2023Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 6 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Sep 19, 2021Updated 4 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Nov 14, 2018Updated 7 years ago
- QIIME 2 plugin wrapping DADA2☆22Jan 27, 2026Updated last month
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- ☆23Aug 28, 2020Updated 5 years ago
- Manager for multi-container computing environments☆26Updated this week
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago