A Cytoscape app for importing KGML(KEGG pathway XML)
☆27Mar 13, 2026Updated 7 months ago
Alternatives and similar repositories for KEGGscape
Users that are interested in KEGGscape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- Library for KEGG pathway enrichment analysis☆20Oct 26, 2026Updated last week
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- A collection of bioinformatics algorithms☆12Aug 20, 2022Updated 4 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 12 years ago
- Pipeline for the Nanopore 16S and ITS long read clustering and taxonomy classification☆23Oct 20, 2026Updated last week
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆22Jul 22, 2023Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Mar 23, 2022Updated 4 years ago
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 8 years ago
- Simple visualisation tool for sequences' similarity in bioinformatics☆13Apr 12, 2018Updated 8 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆24Sep 5, 2023Updated 3 years ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Jan 31, 2024Updated 2 years ago
- Rapid Profiling and Deconvolution Tool for Metagenomes☆114Sep 14, 2026Updated last month
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 9 years ago
- Nextflow pipeline for species-specific typing of bacteria☆11Oct 13, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 7 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Feb 24, 2022Updated 4 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 10 years ago
- GenePiper☆12Mar 13, 2022Updated 4 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- String search using the Burrows-Wheeler transform☆19Dec 15, 2019Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- INDRA Context Graph Extension☆16Sep 29, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information☆13Apr 4, 2025Updated last year
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 6 years ago
- Kernel-based nonparametric methods for regression and classification on compositional data.☆10Dec 1, 2023Updated 2 years ago
- Wessim: Whole Exome Sequencing SIMulator using in silico exome capture☆15Aug 18, 2020Updated 6 years ago
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- A short script for converting .csv file data into an .fcs file, and vise versa.☆19Apr 2, 2021Updated 5 years ago