HipSTR-Tool / HipSTRLinks
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
☆32Updated 4 years ago
Alternatives and similar repositories for HipSTR
Users that are interested in HipSTR are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆22Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆81Updated 7 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆30Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- ☆51Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- Structural variant merging tool☆55Updated last year
- Specifications for PacBio® native file formats☆31Updated 11 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- UCSC Nanopore☆44Updated 6 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆49Updated last year
- SV genotyping with long reads☆40Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- ☆44Updated last year
- ☆36Updated last year
- WDL workflows for variant calling and assembly using ONT☆36Updated 2 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago