shaunpwilkinson / kmerLinks
K-mer Counting for Biological Sequence Analysis
☆27Updated 6 years ago
Alternatives and similar repositories for kmer
Users that are interested in kmer are comparing it to the libraries listed below
Sorting:
- Analysis with Profile Hidden Markov Models☆22Updated last year
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- fastqcr: Quality Control of Sequencing Data☆74Updated 2 years ago
- Easy to define segments in y-axis for 'ggplot2'.☆27Updated 5 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated last month
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 11 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 4 months ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- R interface to the JBrowse 2 Linear Genome View.☆38Updated last year
- ☆20Updated 2 months ago
- Efficient manipulation of biological strings☆65Updated 2 months ago
- Htmlwidgets binding R commands to the BioCircos.js library☆39Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 9 months ago
- An interactive web application for demonstrating and using phyloseq.☆60Updated 6 years ago
- A Toolbox for Manipulating Biological Sequences in R☆23Updated 3 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- R We There Yet?☆31Updated 5 months ago
- R interface to 'Gos'☆39Updated 2 years ago
- Genomic plot in trellis layout☆41Updated last year
- Fit LOg-RAtio Lasso regression for compositional covariates☆13Updated 2 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 10 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week
- Drawing 'dendrogram' using 'ggtree'☆13Updated 5 months ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 months ago