shaunpwilkinson / kmer
K-mer Counting for Biological Sequence Analysis
☆27Updated 5 years ago
Alternatives and similar repositories for kmer:
Users that are interested in kmer are comparing it to the libraries listed below
- Analysis with Profile Hidden Markov Models☆22Updated 8 months ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- R interface to the JBrowse 2 Linear Genome View.☆36Updated last year
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated 8 months ago
- ☆26Updated last year
- Simple R utilities for working with HMMER☆18Updated 5 months ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- ☆19Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- R interface to 'Gos'☆38Updated 2 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆12Updated last month
- ☆19Updated last year
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 2 weeks ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 4 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 3 months ago
- Easy to define segments in y-axis for 'ggplot2'.☆28Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- An interactive web application for demonstrating and using phyloseq.☆60Updated 5 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- Linear Decomposition Model☆24Updated last year
- ☆20Updated 3 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago