K-mer Counting for Biological Sequence Analysis
☆29Jan 23, 2026Updated 7 months ago
Alternatives and similar repositories for kmer
Users that are interested in kmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis with Profile Hidden Markov Models☆22Jan 23, 2026Updated 7 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Mar 20, 2026Updated 5 months ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- SymPortal is an analytical tool used to identify Symbiodiniaceae genotypes using Illumina rDNA ITS2 amplicon NGS data.☆20Feb 12, 2024Updated 2 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆16Jan 9, 2019Updated 7 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- Cheat Sheets for mlr3 and Friends☆11Jul 16, 2026Updated last month
- Simple visualisation tool for sequences' similarity in bioinformatics☆13Apr 12, 2018Updated 8 years ago
- A Toolbox for Manipulating Biological Sequences in R☆26Sep 30, 2025Updated 11 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- CRAN Package For Managing Bioconductor Packages☆76Jul 30, 2026Updated last month
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago
- Metagenomics-related extended functionalities to samtools☆23Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Using the docker container to do parallel computing in R☆19Jan 26, 2022Updated 4 years ago
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- Icongram for R☆33Aug 18, 2020Updated 6 years ago
- ☆22Updated this week
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆51Jun 7, 2023Updated 3 years ago
- Dimensionality reduction for exponential family data by extending PCA☆23Aug 4, 2018Updated 8 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated 2 years ago
- Web-based software for visualization of molecular maps in 2D and 3D☆28Jul 31, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 7 months ago
- Implementation of core data structures for R☆80Jun 28, 2023Updated 3 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆31Apr 28, 2026Updated 4 months ago
- Parse command-line arguments and simple variable interpolation☆17Feb 6, 2026Updated 6 months ago
- IBD based kinship estimation☆16Mar 3, 2023Updated 3 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Apr 11, 2017Updated 9 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Aug 16, 2026Updated 2 weeks ago
- Convert TCR gene names☆15Dec 26, 2025Updated 8 months ago
- Adaptive builder for formatted strings☆17Oct 30, 2015Updated 10 years ago
- Draggable regression points in R Shiny☆21Jun 15, 2020Updated 6 years ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆13Mar 11, 2026Updated 5 months ago
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆18Jul 9, 2024Updated 2 years ago