K-mer Counting for Biological Sequence Analysis
☆29Jan 23, 2026Updated 4 months ago
Alternatives and similar repositories for kmer
Users that are interested in kmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis with Profile Hidden Markov Models☆22Jan 23, 2026Updated 4 months ago
- Dendrograms for Evolutionary Analysis☆12Dec 9, 2019Updated 6 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Mar 20, 2026Updated 2 months ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Jan 9, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- SymPortal is an analytical tool used to identify Symbiodiniaceae genotypes using Illumina rDNA ITS2 amplicon NGS data.☆21Feb 12, 2024Updated 2 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 5 months ago
- Cheat Sheets for mlr3 and Friends☆11Updated this week
- Simple visualisation tool for sequences' similarity in bioinformatics☆13Apr 12, 2018Updated 8 years ago
- POUTINE: a next-generation homoplasy counting method for genome-wide association studies.☆10Mar 9, 2023Updated 3 years ago
- Mandel Lab Protocols☆12Mar 3, 2026Updated 3 months ago
- A Toolbox for Manipulating Biological Sequences in R☆26Sep 30, 2025Updated 8 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Metagenomics-related extended functionalities to samtools☆22Jul 6, 2023Updated 2 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- Using the docker container to do parallel computing in R☆19Jan 26, 2022Updated 4 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 8 years ago
- Icongram for R☆33Aug 18, 2020Updated 5 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Dimensionality reduction for exponential family data by extending PCA☆23Aug 4, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- RStudio addin to paste last value as comment in code☆11May 24, 2021Updated 5 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated 2 years ago
- Web-based software for visualization of molecular maps in 2D and 3D☆28Jul 31, 2023Updated 2 years ago
- Python package for simulating spreading phenomena in complex networks☆27Mar 16, 2026Updated 2 months ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆138Jan 28, 2026Updated 4 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆49Jun 7, 2023Updated 3 years ago
- R Package - Dynamical Systems Approach to Immune Response Modeling☆34Jul 19, 2024Updated last year
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Implementation of core data structures for R☆80Jun 28, 2023Updated 2 years ago
- R Interfaces to Phylogenetic Software☆12Mar 24, 2026Updated 2 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- Parse command-line arguments and simple variable interpolation☆17Feb 6, 2026Updated 4 months ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 4 months ago
- ☆11Apr 11, 2017Updated 9 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago