LosicLab / starchipLinks
Detection of Circular RNA and Fusions from RNA-Seq
☆32Updated 6 years ago
Alternatives and similar repositories for starchip
Users that are interested in starchip are comparing it to the libraries listed below
Sorting:
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆31Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- ☆23Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆22Updated last year
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆40Updated last year
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 10 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆38Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- ☆21Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated 3 weeks ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- ☆33Updated 3 years ago
- ☆23Updated 7 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- ☆13Updated 7 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago