LosicLab / starchipLinks
Detection of Circular RNA and Fusions from RNA-Seq
☆32Updated 7 years ago
Alternatives and similar repositories for starchip
Users that are interested in starchip are comparing it to the libraries listed below
Sorting:
- Gene Fusion Visualiser☆51Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 2 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- ☆26Updated last year
- IDR☆31Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- SingleCell Nanopore sequencing data analysis☆63Updated 5 months ago
- ☆33Updated 3 years ago
- ☆23Updated 11 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 9 months ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- ☆38Updated 4 years ago