LosicLab / starchip
Detection of Circular RNA and Fusions from RNA-Seq
☆32Updated 6 years ago
Alternatives and similar repositories for starchip:
Users that are interested in starchip are comparing it to the libraries listed below
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Genomic Association Tester☆30Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- ☆13Updated 7 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- RNA-seq workflow: differential transcript usage☆21Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- IDR☆31Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu …☆31Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Find and characterise transposable element insertions☆21Updated last year
- cfDNA cell type of origin estimation☆31Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- ☆23Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Software for performing UDiTaS sequencing analysis.☆13Updated 2 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago