kuixu / alphafoldLinks
Install alphafold on the local machine, get out of docker.
☆103Updated 4 years ago
Alternatives and similar repositories for alphafold
Users that are interested in alphafold are comparing it to the libraries listed below
Sorting:
- ☆31Updated 3 years ago
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆172Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆165Updated 7 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆117Updated last year
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆121Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆179Updated this week
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆124Updated 2 years ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆200Updated last month
- ☆96Updated 5 months ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆165Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107Updated 6 months ago
- Bilingual Language Model for Protein Sequence and Structure☆280Updated 11 months ago
- Evolutionary velocity with protein language models☆94Updated this week
- Efficient evolution from protein language models☆217Updated 2 years ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 8 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Updated last year
- ☆299Updated 2 weeks ago
- MMseqs2 app to run on your workstation or servers☆99Updated last month
- Antibody Numbering and Antigen Receptor ClassIfication☆250Updated last year
- The LinearDesign mRNA design software.☆195Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- Predict the binding affinity of protein-protein complexes from structural data☆162Updated 2 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆153Updated 5 months ago
- Code for ColabDock paper☆149Updated 7 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆166Updated last year
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆175Updated 2 years ago
- alphafold3 architecture step by step walkthrough.☆147Updated 5 months ago