Alternatives and similar repositories for alphafold

Users that are interested in alphafold are comparing it to the libraries listed below

• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆103Updated 11 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆175Updated 2 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆79Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆145Updated 2 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆151Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆112Updated 9 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆141Updated last month
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆113Updated last year
• jcheongs / alphafold-multimer
  ☆31Updated 3 years ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆169Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆84Updated this week
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆79Updated last month
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• KosinskiLab / AlphaPulldown
  ☆280Updated this week
• greener-group / progres
  Fast protein structure searching or your money back
  ☆103Updated 2 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆207Updated last year
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆40Updated last year
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆137Updated 2 months ago
• mattarnoldbio / alphapickle
  ☆31Updated last year
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆95Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆87Updated 4 months ago
• aqlaboratory / rgn2
  ☆106Updated last year
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆101Updated last month
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆81Updated 10 months ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆162Updated 9 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆252Updated 5 months ago
• ntranoslab / esm-variants
  ☆74Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆51Updated 8 months ago