Geometric deep learning of protein–DNA binding specificity
☆80Mar 19, 2025Updated last year
Alternatives and similar repositories for DeepPBS
Users that are interested in DeepPBS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A method to predict DNA shape features considering farther flanking region.☆42Sep 25, 2024Updated 2 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- ☆32Aug 12, 2024Updated 2 years ago
- ☆15Jan 27, 2025Updated last year
- Design scripts corresponding to "Computational design of sequence-specific DNA-binding proteins."☆23Oct 23, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆50Nov 4, 2025Updated 11 months ago
- ☆27Feb 10, 2024Updated 2 years ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 4 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆381Jun 3, 2024Updated 2 years ago
- ☆16Apr 3, 2025Updated last year
- ☆131Jul 18, 2025Updated last year
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 9 years ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 3 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Official repository of PXDesign☆267Dec 31, 2025Updated 9 months ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆27Jul 15, 2025Updated last year
- Template-based protein design with Raygun☆157Updated this week
- Source code for the reproduction of RibbonFold paper.☆12May 10, 2025Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆120Nov 18, 2025Updated 10 months ago
- Open Source, Prepare a molecular dynamic simulation from scratch without installing local VMD, use LigParGen for topology, it is one of t…☆14Jul 3, 2023Updated 3 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- GerNA-Bind: Geometric-enhanced RNA-ligand Binding Specificity Prediction with Deep Learning☆32Dec 15, 2025Updated 9 months ago
- ☆69Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 7 years ago
- ☆35Mar 2, 2026Updated 7 months ago
- DrugHIVE: Structure-based drug design with a deep hierarchical generative model☆115Oct 31, 2024Updated last year
- ☆15May 29, 2024Updated 2 years ago
- ☆118Jan 3, 2026Updated 9 months ago
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 6 months ago
- ☆26Oct 8, 2024Updated 2 years ago
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆37Jul 4, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Rifdock Library for Conformational Search☆179May 16, 2024Updated 2 years ago
- The package of ProBuilder from Longxing Cao lab☆26Jan 19, 2026Updated 8 months ago
- ☆826May 18, 2026Updated 4 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆143Jan 28, 2026Updated 8 months ago
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 3 months ago
- ☆12Oct 9, 2024Updated 2 years ago