timkartar / DeepPBSLinks
Geometric deep learning of protein–DNA binding specificity
☆76Updated 4 months ago
Alternatives and similar repositories for DeepPBS
Users that are interested in DeepPBS are comparing it to the libraries listed below
Sorting:
- ☆68Updated 10 months ago
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆47Updated 3 weeks ago
- ☆90Updated 9 months ago
- ColabFold protocol☆52Updated 9 months ago
- ☆31Updated 3 years ago
- Protein language model trained on coding DNA☆47Updated 9 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 7 months ago
- Learning the language of protein-protein interactions☆85Updated 3 weeks ago
- PLM based active learning model for protein engineering☆82Updated last year
- ☆35Updated last year
- open source code for Tencent tFold☆106Updated 4 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆65Updated last year
- ☆44Updated 10 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆100Updated 2 weeks ago
- Fast indexing and search of discontinuous motifs in protein structures☆62Updated last week
- ☆40Updated 11 months ago
- ☆89Updated last month
- Feature map and function annotation of Proteins☆33Updated last year
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆42Updated last year
- ☆51Updated this week
- Evolutionary velocity with protein language models☆93Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆115Updated 11 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆51Updated 3 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆154Updated 3 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆80Updated last year
- OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."☆33Updated last month
- A generalized enzyme kinetics parameter prediction model.☆55Updated last month
- Official release of the ProGen models☆34Updated 6 months ago