timkartar / DeepPBSLinks
Geometric deep learning of protein–DNA binding specificity
☆76Updated 8 months ago
Alternatives and similar repositories for DeepPBS
Users that are interested in DeepPBS are comparing it to the libraries listed below
Sorting:
- Code repository of "Deep generative design of RNA family sequences"☆38Updated 3 weeks ago
- ☆74Updated last year
- Protein language model trained on coding DNA☆51Updated last year
- ☆58Updated 3 months ago
- Learning the language of protein-protein interactions☆103Updated 2 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆104Updated 4 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆166Updated 7 months ago
- ☆31Updated 3 years ago
- ☆50Updated last year
- ☆91Updated last year
- PLM based active learning model for protein engineering☆84Updated last year
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆67Updated 3 months ago
- ColabFold protocol☆57Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆76Updated 2 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- RNA Multiple Sequence Alignment☆46Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated this week
- Fast indexing and search of discontinuous motifs in protein structures☆99Updated last week
- ☆45Updated 3 months ago
- Predicting high-fitness mutations based on protein inverse folding models☆68Updated 2 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- ☆75Updated last year
- A generalized enzyme kinetics parameter prediction model.☆71Updated 2 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆60Updated 2 weeks ago
- ☆31Updated last year
- ☆37Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆55Updated 7 months ago
- open source code for Tencent tFold☆118Updated 8 months ago