Geometric deep learning of protein–DNA binding specificity
☆81Mar 19, 2025Updated last year
Alternatives and similar repositories for DeepPBS
Users that are interested in DeepPBS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A method to predict DNA shape features considering farther flanking region.☆42Sep 25, 2024Updated 2 years ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆19May 15, 2026Updated 5 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆383Jun 3, 2024Updated 2 years ago
- ☆36Mar 2, 2026Updated 8 months ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆28Jul 15, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆31Aug 12, 2024Updated 2 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- ☆15Jan 27, 2025Updated last year
- Official repository of PXDesign☆272Dec 31, 2025Updated 10 months ago
- ☆12Jul 10, 2025Updated last year
- ☆27Feb 10, 2024Updated 2 years ago
- Design scripts corresponding to "Computational design of sequence-specific DNA-binding proteins."☆23Oct 23, 2025Updated last year
- ☆34Feb 5, 2025Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆51Nov 4, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Template-based protein design with Raygun☆158Oct 7, 2026Updated 3 weeks ago
- Joint Protein-Ligand Embedding☆11Oct 3, 2025Updated last year
- ☆71Oct 8, 2026Updated 3 weeks ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆143Jan 28, 2026Updated 9 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆87May 27, 2026Updated 5 months ago
- Rifdock Library for Conformational Search☆178May 16, 2024Updated 2 years ago
- ☆13Feb 7, 2023Updated 3 years ago
- ☆16Apr 3, 2025Updated last year
- Scripts to generate and analyze afdb clusters☆12Sep 15, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆131Jul 18, 2025Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 6 months ago
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆44Updated this week
- Shrinking Proteins with Diffusion☆34Oct 12, 2026Updated 3 weeks ago
- HInt (Homologous Interactions)☆10Updated this week
- Toolkit for alphafold3 input and output files☆111Oct 23, 2026Updated last week
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 9 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 8 years ago
- Code for our work on Protein-DNA binding prediction using FMs+CrossAttention☆10Oct 12, 2024Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆177Oct 11, 2023Updated 3 years ago
- Code for the ProteinMPNN paper☆1,895Aug 14, 2024Updated 2 years ago
- ☆150Jul 16, 2025Updated last year
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- Collections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)☆11May 16, 2026Updated 5 months ago