timkartar / DeepPBS
Geometric deep learning of protein–DNA binding specificity
☆64Updated 3 weeks ago
Alternatives and similar repositories for DeepPBS:
Users that are interested in DeepPBS are comparing it to the libraries listed below
- ☆28Updated 3 years ago
- Code repository of "Deep generative design of RNA family sequences"☆33Updated 8 months ago
- ☆67Updated 6 months ago
- PLM based active learning model for protein engineering☆77Updated 8 months ago
- ☆79Updated 6 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆41Updated 8 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆133Updated 2 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆57Updated 10 months ago
- ColabFold protocol☆50Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆82Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆44Updated last month
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆56Updated 2 months ago
- ☆71Updated 7 months ago
- ☆32Updated last week
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆69Updated 4 months ago
- Protein language model trained on coding DNA☆46Updated 5 months ago
- open source code for Tencent tFold☆95Updated last month
- Code for ColabDock paper☆137Updated 5 months ago
- RNA Multiple Sequence Alignment☆38Updated last year
- Learning the language of protein-protein interactions☆62Updated 2 weeks ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 8 months ago
- ☆101Updated 9 months ago
- Feature map and function annotation of Proteins☆32Updated 10 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆148Updated last year
- ☆49Updated 2 weeks ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆111Updated last year
- ☆36Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆46Updated 4 months ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆29Updated 3 months ago
- ☆25Updated 10 months ago