Alternatives and similar repositories for UFold

Users that are interested in UFold are comparing it to the libraries listed below

• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆146Updated 2 months ago
• jaswindersingh2 / SPOT-RNA
  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
  ☆107Updated 7 months ago
• a96123155 / UTR-LM
  ☆91Updated last year
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆154Updated this week
• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆106Updated last week
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆52Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆167Updated 8 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆47Updated 2 years ago
• robpearc / DeepFoldRNA
  ☆37Updated 2 years ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 9 months ago
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆88Updated 4 years ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆40Updated last month
• RainaBio / GEMORNA
  This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.
  ☆78Updated last month
• tymor22 / tm-vec
  ☆74Updated last year
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆75Updated 2 years ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆138Updated last year
• yikunpku / RNA-MSM
  Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…
  ☆67Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 3 weeks ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆61Updated 3 weeks ago
• enijkamp / progen2
  Official release of the ProGen models
  ☆50Updated 11 months ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆104Updated 4 years ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆85Updated 10 months ago
• instadeepai / InstaNovo
  De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
  ☆109Updated 2 weeks ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆84Updated last year
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆134Updated 9 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆111Updated 4 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• MachineLearningLifeScience / meaningful-protein-representations
  ☆111Updated 3 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago