uci-cbcl / UFoldLinks
☆76Updated 7 months ago
Alternatives and similar repositories for UFold
Users that are interested in UFold are comparing it to the libraries listed below
Sorting:
- RiboNucleic Acid (RNA) Language Model☆144Updated 2 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆153Updated 5 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated last week
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107Updated 6 months ago
- ☆91Updated last year
- Protein language model trained on coding DNA☆52Updated last year
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- ☆108Updated 2 years ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆84Updated 10 months ago
- Code repository of "Deep generative design of RNA family sequences"☆39Updated last month
- Geometric deep learning of protein–DNA binding specificity☆76Updated 8 months ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Updated 4 years ago
- ☆74Updated last year
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆69Updated last month
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆75Updated 2 years ago
- CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆187Updated 4 months ago
- Official release of the ProGen models☆46Updated 10 months ago
- MSA Transformer reproduction code☆87Updated 4 years ago
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆105Updated this week
- Fast deep learning methods for large-scale protein-protein interaction screening☆107Updated 4 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆165Updated 7 months ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆67Updated last year
- open source code for Tencent tFold☆119Updated 8 months ago
- ☆37Updated last year
- Evolutionary velocity with protein language models☆94Updated this week
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- ☆36Updated 10 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆186Updated last year