Alternatives and similar repositories for mavedb-api

Users that are interested in mavedb-api are comparing it to the libraries listed below

• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆75Updated last year
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆26Updated last month
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 11 months ago
• ntranoslab / esm-variants
  ☆74Updated last year
• piercelab / tcrmodel2
  ☆41Updated 2 months ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆32Updated 3 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆53Updated 3 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆32Updated last month
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆19Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆43Updated last year
• Doudna-lab / GARNET_DL
  ☆37Updated 4 months ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆18Updated 2 months ago
• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆16Updated 2 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆34Updated 3 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• tymor22 / tm-vec
  ☆68Updated 8 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆38Updated 8 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆27Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆53Updated last year
• bm2-lab / PanPep
  ☆49Updated last year
• albert-ying / MethylGPT
  This is the official codebase for methylGPT : a foundation model for the DNA methylome.
  ☆36Updated 3 weeks ago
• haiyuan-yu-lab / PIONEER
  ☆25Updated 5 months ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆35Updated 8 months ago
• gzBiomedical / EpiScan
  Antibody-Specific Epitope Mapping
  ☆13Updated 6 months ago
• TencentAILabHealthcare / SC-AIR-BERT
  ☆9Updated 2 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆47Updated 5 years ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆56Updated last week