Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U. Chorostecki, T. Gabaldón, F. Ariel, L. Di Persia, D.H. Milone & G. Stegmayer, Briefings in Bioinformatics, 2022.
☆20Mar 17, 2024Updated 2 years ago
Alternatives and similar repositories for lncRNA-folding
Users that are interested in lncRNA-folding are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Apr 7, 2024Updated 2 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Nov 12, 2024Updated last year
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- ☆15Apr 9, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆33Jan 25, 2026Updated 3 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 11 months ago
- A python package implements scTenifoldnet and scTenifoldknk☆58Oct 18, 2022Updated 3 years ago
- ☆15Apr 22, 2022Updated 4 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆163Mar 22, 2026Updated last month
- Toolkit for structure-based deep learning on RNA.☆46Apr 15, 2026Updated 3 weeks ago
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach☆10Apr 2, 2020Updated 6 years ago
- Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins☆14Nov 5, 2023Updated 2 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Apr 5, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.co…☆12Aug 28, 2021Updated 4 years ago
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆17Jan 13, 2026Updated 3 months ago
- single RNA-seq analysis of human keloid samples☆12May 25, 2021Updated 4 years ago
- ☆19Sep 29, 2021Updated 4 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 8 months ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- Python package to manage protein structures and their annotations☆46Mar 18, 2026Updated last month
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Feb 13, 2019Updated 7 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- ☆12Updated this week
- ☆12Oct 9, 2024Updated last year
- ☆12Dec 2, 2024Updated last year
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Apr 3, 2021Updated 5 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 9 months ago
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- Detection of remote homology by comparison of protein language model representations☆62Dec 16, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FingerPrint Kit - Python-based cheminformatics package for fingerprint-related tasks☆12Jun 4, 2025Updated 11 months ago
- Tutorial for Graph Neural Network at APBJC 2024.☆11Apr 21, 2025Updated last year
- 基于词典的正向最大匹配分词算法和基于词典的逆向最大匹配分词算法☆13Dec 12, 2017Updated 8 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Apr 13, 2026Updated 3 weeks ago
- ☆13Jun 5, 2024Updated last year
- A chemical Organic Synthesis Exploration Tool☆11Nov 19, 2018Updated 7 years ago
- Started as a Team Project for CS690D at UMass Amherst, now turning into pytorch implementation of hyperbolic neural networks using Poinca…☆12Dec 8, 2022Updated 3 years ago