sinc-lab / lncRNA-foldingLinks
Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U. Chorostecki, T. Gabaldón, F. Ariel, L. Di Persia, D.H. Milone & G. Stegmayer, Briefings in Bioinformatics, 2022.
☆19Updated last year
Alternatives and similar repositories for lncRNA-folding
Users that are interested in lncRNA-folding are comparing it to the libraries listed below
Sorting:
- Protein language model trained on coding DNA☆51Updated last year
- ☆77Updated 8 months ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆31Updated 4 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- Transformer-based protein function Annotation with joint feature-Label Embedding☆36Updated last year
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆32Updated 2 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆75Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- ☆36Updated 11 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated this week
- ☆16Updated last year
- ☆111Updated 3 years ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆29Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 9 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆24Updated last year
- Neural networks for deep mutational scanning data☆70Updated 6 months ago
- ☆48Updated 4 years ago
- ☆29Updated 3 years ago
- ☆50Updated last year
- Geometry-aware protein binding site predictor☆25Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆42Updated last year
- ☆74Updated last year
- ☆108Updated 2 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107Updated 6 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- ☆91Updated last year
- Trainable representation analysis study repository☆44Updated 3 years ago
- ☆23Updated last year