Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U. Chorostecki, T. Gabaldón, F. Ariel, L. Di Persia, D.H. Milone & G. Stegmayer, Briefings in Bioinformatics, 2022.
☆20Mar 17, 2024Updated 2 years ago
Alternatives and similar repositories for lncRNA-folding
Users that are interested in lncRNA-folding are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆78Apr 22, 2025Updated last year
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 3 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Apr 7, 2024Updated 2 years ago
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 2 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Nov 12, 2024Updated last year
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated last year
- ☆15Apr 22, 2022Updated 4 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆160Mar 22, 2026Updated 2 months ago
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach☆10Apr 2, 2020Updated 6 years ago
- Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins☆14Nov 5, 2023Updated 2 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated last month
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆17Jan 13, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Sep 29, 2021Updated 4 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 9 months ago
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- Python package to manage protein structures and their annotations☆46Mar 18, 2026Updated 2 months ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24May 19, 2024Updated 2 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- ☆12Oct 9, 2024Updated last year
- 分布式题库管理系统.☆18Mar 22, 2019Updated 7 years ago
- ☆12Dec 2, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Apr 3, 2021Updated 5 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 10 months ago
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- Detection of remote homology by comparison of protein language model representations☆63Dec 16, 2024Updated last year
- FingerPrint Kit - Python-based cheminformatics package for fingerprint-related tasks☆12Jun 4, 2025Updated 11 months ago
- Tutorial for Graph Neural Network at APBJC 2024.☆11Apr 21, 2025Updated last year
- 基于词典的正向最大匹配分词算法和基于词典的逆向最大匹配分词算法☆13Dec 12, 2017Updated 8 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated last month
- A chemical Organic Synthesis Exploration Tool☆11Nov 19, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 'Node Workers' for the Swarm City Dapp.☆14Apr 27, 2022Updated 4 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Nov 3, 2022Updated 3 years ago
- the process of operating data types in the TCGA database☆19Dec 11, 2020Updated 5 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- ☆14Jun 5, 2024Updated last year
- Taxallnomy is a balanced taxonomic tree database based on NCBI Taxonomy that provides taxonomic lineages according to the taxonomic ranks…☆13Apr 13, 2025Updated last year
- ☆48Jan 28, 2026Updated 3 months ago