☆86Sep 20, 2023Updated 2 years ago
Alternatives and similar repositories for esm-variants
Users that are interested in esm-variants are comparing it to the libraries listed below
Sorting:
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated last month
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated 11 months ago
- ☆617Mar 13, 2024Updated last year
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Dec 8, 2025Updated 2 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 5 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Aug 5, 2025Updated 7 months ago
- ☆30Aug 27, 2025Updated 6 months ago
- ☆39Jul 3, 2025Updated 8 months ago
- ☆40Sep 17, 2024Updated last year
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- Reference-free analysis of genetic architecture☆22Sep 21, 2024Updated last year
- ☆21Nov 15, 2022Updated 3 years ago
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆56Nov 5, 2025Updated 3 months ago
- Genomic Pre-trained Network☆325Feb 24, 2026Updated last week
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- ☆14Jul 14, 2023Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆391Jan 12, 2026Updated last month
- ☆12Nov 6, 2023Updated 2 years ago
- ☆12Dec 7, 2020Updated 5 years ago
- Deep learning framework for SV calling and genotyping☆113Nov 8, 2023Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆194Mar 16, 2024Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 3 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Sep 13, 2022Updated 3 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 9 months ago
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago
- Analyses related to the Borzoi paper.☆25Dec 14, 2025Updated 2 months ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- ☆29Dec 20, 2024Updated last year
- ☆123Feb 20, 2026Updated last week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Dec 3, 2024Updated last year
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated last year
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 5 months ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 4 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆89Dec 10, 2025Updated 2 months ago