Alternatives and similar repositories for esm-variants:

Users that are interested in esm-variants are comparing it to the libraries listed below

• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 9 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆69Updated 10 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆166Updated 11 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 2 weeks ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆84Updated last year
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆17Updated 2 years ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆30Updated 2 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆72Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆31Updated 8 months ago
• a96123155 / UTR-LM
  ☆73Updated 4 months ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆26Updated 3 weeks ago
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆19Updated 2 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆45Updated 6 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆70Updated this week
• WangLabTHU / GPro
  GPro: a toolbox for Generative approaches in promoter design
  ☆17Updated 11 months ago
• kundajelab / DART-Eval
  ☆27Updated last month
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆100Updated 5 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆44Updated 5 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated last week
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆49Updated 2 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆55Updated last month
• Illumina / PrimateAI-3D
  ☆64Updated 7 months ago
• tymor22 / tm-vec
  ☆65Updated 4 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆65Updated last year
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆53Updated 7 months ago
• DasLab / draw_rna
  Draw RNA secondary structures in python.
  ☆46Updated 5 months ago