greenelab / onboarding

Related projects ⓘ

Alternatives and complementary repositories for onboarding

• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆19Updated 4 months ago
• biodatascience / compbio
  Introduction to Computational Biology
  ☆30Updated last week
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated 3 weeks ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 6 years ago
• csoneson / treeclimbR
  ☆19Updated 3 weeks ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated last year
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆20Updated 6 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆14Updated 3 weeks ago
• Bioconductor / bioc_git_transition
  This python package is for transitioning bioconductor from SVN to git
  ☆14Updated last year
• drisso / ThrivingInBioinformatics
  ☆10Updated 4 years ago
• Bioconductor / TENxBrainAnalysis
  R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
  ☆12Updated last year
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 3 weeks ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 3 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆40Updated 6 months ago
• vsbuffalo / gplyr
  ☆18Updated 7 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 4 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆23Updated last year
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆36Updated 3 weeks ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆30Updated this week
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated last month
• Bioconductor / S4Vectors
  Foundation of vector-like and list-like containers in Bioconductor
  ☆18Updated last week
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last week
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated last year
• lianos / sparrow
  Take command of your set enrichment analyses.
  ☆20Updated this week
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated last month
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆50Updated 6 months ago
• areyesq89 / SummarizedBenchmark
  SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.
  ☆15Updated 3 years ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆35Updated last year