Alternatives and similar repositories for onboarding

Users that are interested in onboarding are comparing it to the libraries listed below

• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 3 weeks ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated last month
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆31Updated last week
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated 2 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated last month
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 7 years ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆54Updated 8 months ago
• csoneson / treeclimbR
  ☆20Updated last month
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated last month
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 11 months ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated last month
• Bioconductor / bioconductor_full
  [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages
  ☆25Updated 2 years ago
• vsbuffalo / gplyr
  ☆18Updated 8 years ago
• StoreyLab / biobroom
  Tidy up computational biology objects
  ☆50Updated 6 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 5 months ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 4 years ago
• lcolladotor / derfinder
  Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
  ☆45Updated 11 months ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 8 years ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated last month
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated 2 years ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated 2 months ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆15Updated last year
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆63Updated 2 months ago
• Bohdan-Khomtchouk / shinyheatmap
  Web application for enormous biological heatmaps
  ☆66Updated 5 years ago