TrinityCTAT / CTAT-VirusIntegrationFinderLinks
☆17Updated 4 months ago
Alternatives and similar repositories for CTAT-VirusIntegrationFinder
Users that are interested in CTAT-VirusIntegrationFinder are comparing it to the libraries listed below
Sorting:
- Long read to rMATS☆32Updated 2 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- tspex: tissue-specificity calculator☆36Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- ☆38Updated 2 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- ☆33Updated last month
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- ☆38Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆15Updated 7 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆58Updated 10 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated last week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- A python package and a set of shell commands to handle GTF files☆50Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 weeks ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 5 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 5 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 3 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year