TrinityCTAT / CTAT-VirusIntegrationFinder
☆15Updated last year
Alternatives and similar repositories for CTAT-VirusIntegrationFinder:
Users that are interested in CTAT-VirusIntegrationFinder are comparing it to the libraries listed below
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated last year
- Long read to rMATS☆31Updated last year
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 7 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- ☆23Updated 3 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- A tool for sample swap identification in high throughput sequencing studies☆10Updated last month
- Digenome-toolkit ver2.☆16Updated 3 years ago
- ☆30Updated 11 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 3 years ago
- ☆22Updated 4 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated 11 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- ☆15Updated 2 years ago
- ☆14Updated 6 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆27Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated 10 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated last month
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago