TrinityCTAT / CTAT-VirusIntegrationFinder
☆15Updated last year
Alternatives and similar repositories for CTAT-VirusIntegrationFinder:
Users that are interested in CTAT-VirusIntegrationFinder are comparing it to the libraries listed below
- ☆33Updated last year
- Long read to rMATS☆31Updated last year
- Ultra-fast 5' and 3' demultiplexer☆26Updated 10 months ago
- ☆25Updated last month
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ☆15Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 5 years ago
- Third-generation fusion gene detection☆14Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- An R package to process and analyze transcriptomic data☆16Updated 5 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- ☆21Updated 2 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ☆30Updated 4 years ago
- ☆23Updated 3 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆25Updated last year
- Version II of Mandalorion☆32Updated 6 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆23Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 4 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last week
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆44Updated 4 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- ☆30Updated 9 months ago
- Master of Pores 2☆23Updated 2 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆23Updated 10 months ago
- ☆28Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 4 months ago