TrinityCTAT / CTAT-VirusIntegrationFinderLinks
☆17Updated 4 months ago
Alternatives and similar repositories for CTAT-VirusIntegrationFinder
Users that are interested in CTAT-VirusIntegrationFinder are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- ☆38Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- tspex: tissue-specificity calculator☆36Updated 2 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆33Updated last month
- ☆38Updated last year
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Evolutionary Transcriptomics with R☆48Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆58Updated 10 months ago
- A library for counting small kmer frequencies in nucleotide sequences.☆28Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- Merging paired-end reads and removing adapters☆46Updated last month
- ☆24Updated last year
- ☆15Updated 7 years ago
- ☆34Updated 2 years ago
- ☆51Updated 6 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 weeks ago