dozmorovlab / excluderangesLinks
Genomic coordinates of problematic genomic regions as GRanges
☆49Updated 2 weeks ago
Alternatives and similar repositories for excluderanges
Users that are interested in excluderanges are comparing it to the libraries listed below
Sorting:
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- ☆63Updated last year
- Links to ATAC-seq analysis tools☆74Updated 4 years ago
- Tutorial Website☆60Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Tools for working with BUS files☆102Updated 7 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆55Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆72Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- ☆38Updated 5 years ago
- Ultraperformant reimplementation of SICER☆58Updated 3 weeks ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- ☆62Updated 5 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆81Updated last month
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated this week
- binned motif enrichment analysis and visualisation☆43Updated last month
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- ☆32Updated 7 years ago