dozmorovlab / excluderanges
Genomic coordinates of problematic genomic regions as GRanges
☆37Updated 4 months ago
Alternatives and similar repositories for excluderanges:
Users that are interested in excluderanges are comparing it to the libraries listed below
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆69Updated 3 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Pipeline for Cut&Tag analysis☆21Updated 2 weeks ago
- Assessing the reproducibility of proccessed ChIP-seq peaks☆12Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated last month
- An analysis toolkit for single-cell methylation sequencing data☆18Updated last month
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆38Updated 5 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆35Updated 9 months ago
- SNV calling from single cell sequencing☆97Updated 5 months ago
- IDR☆31Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆65Updated last week
- Estimate locus specific human LINE-1 expression.☆34Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- workshop website on readthedocs☆19Updated last week
- ☆38Updated 2 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- Single Cell Analysis of Five'Ends☆49Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year