Alternatives and similar repositories for shell-genomics:

Users that are interested in shell-genomics are comparing it to the libraries listed below

• datacarpentry / organization-genomics
  Project Organization and Management for Genomics
  ☆24Updated this week
• datacarpentry / wrangling-genomics
  Data Wrangling and Processing for Genomics
  ☆72Updated last week
• datacarpentry / genomics-r-intro
  Intro to R and RStudio for Genomics
  ☆28Updated this week
• datacarpentry / R-genomics
  Lesson on data analysis and visualization in R for genomics
  ☆41Updated 5 years ago
• widdowquinn / ten_great_papers
  Ten great papers for wet lab biologists starting out in computational biology
  ☆50Updated 5 years ago
• datacarpentry / genomics-workshop
  Genomics Workshop Overview
  ☆46Updated this week
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆69Updated last year
• ngs-docs / angus
  Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
  ☆106Updated 2 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆66Updated last year
• microbiome / mia
  Microbiome analysis
  ☆52Updated this week
• kyclark / bioinformatics_primer
  Bioinformatics with Unix, bash, Make, Python, and parallel
  ☆21Updated 4 years ago
• datacarpentry / cloud-genomics
  Introduction to Cloud Computing for Genomics
  ☆21Updated last week
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• bioinformatics-core-shared-training / IntroductionToStats
  Refresher training course on the foundations of statistical analysis. http://tinyurl.com/cruk-stats
  ☆38Updated 2 months ago
• Bioconductor / BiocWorkshops
  2018 Bioconductor Workshops
  ☆75Updated 5 years ago
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆111Updated last year
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆86Updated 3 years ago
• biodatascience / compbio_src
  Introduction to Computational Biology - source Rmarkdown files
  ☆53Updated 3 months ago
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆143Updated 2 months ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆21Updated 4 years ago
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆89Updated 2 months ago
• ngs-docs / 2017-ucsc-metagenomics
  Workshop materials for shotgun metagenomics
  ☆36Updated 7 years ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆105Updated 4 months ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated 2 months ago
• const-ae / tidygenomics
  Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/
  ☆102Updated 3 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• pinin4fjords / shinyngs
  Shiny apps for NGS etc based on reusable components created using Shiny modules
  ☆75Updated 2 weeks ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆16Updated 7 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago