Introduction to the Command Line for Genomics
☆70Jul 14, 2026Updated last week
Alternatives and similar repositories for shell-genomics
Users that are interested in shell-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomics Workshop Overview☆48Jul 14, 2026Updated last week
- Intro to R and RStudio for Genomics☆33Jun 9, 2026Updated last month
- Data Wrangling and Processing for Genomics☆76Jul 14, 2026Updated last week
- Introduction to Cloud Computing for Genomics☆21Jul 14, 2026Updated last week
- Project Organization and Management for Genomics☆27Jul 14, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Lesson on data analysis and visualization in R for genomics☆43Feb 13, 2019Updated 7 years ago
- Ecology Workshop Overview☆23Jul 14, 2026Updated last week
- Data Cleaning with OpenRefine for Ecologists☆30Jul 14, 2026Updated last week
- Data Organization in Spreadsheets for Ecologists☆43Jul 14, 2026Updated last week
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 3 years ago
- Docker container for genomics analyses in R.☆28Apr 29, 2024Updated 2 years ago
- Il WMS del catasto dell'Agenzia delle Entrate: licenza, come usarlo in QGIS, estrazione dati e digitalizzazione particelle☆14Oct 28, 2022Updated 3 years ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- Scripts, utilities and programs for genomic bioinformatics.☆83Jun 19, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Jul 6, 2022Updated 4 years ago
- PlantCV Workshops☆15Mar 8, 2021Updated 5 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated 2 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆30Oct 10, 2025Updated 9 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 5 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆40Sep 14, 2016Updated 9 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Updated this week
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Forkable teaching materials for course on working with data in R☆93Mar 1, 2026Updated 4 months ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 7 months ago
- Reproducible data science with R, RStudio, Git, and GitHub☆20Sep 30, 2020Updated 5 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Updated this week
- MicrobeDirectory 2.0☆22Aug 10, 2020Updated 5 years ago
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spatio-temporal geostatistical mapping of meteorological data.☆21May 22, 2026Updated last month
- Various scripts for efficient processing of 10k Salmonella genomes☆16Sep 16, 2021Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- The blog of tidyomics☆13Jul 12, 2025Updated last year
- Introduction to Geospatial Concepts☆40May 12, 2026Updated 2 months ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Jul 25, 2025Updated 11 months ago
- Modular & interactive analysis components for bioinformatics☆18Dec 9, 2025Updated 7 months ago