Alternatives and similar repositories for shell-genomics:

Users that are interested in shell-genomics are comparing it to the libraries listed below

• datacarpentry / wrangling-genomics
  Data Wrangling and Processing for Genomics
  ☆72Updated last week
• datacarpentry / organization-genomics
  Project Organization and Management for Genomics
  ☆24Updated last week
• datacarpentry / R-genomics
  Lesson on data analysis and visualization in R for genomics
  ☆41Updated 6 years ago
• datacarpentry / genomics-workshop
  Genomics Workshop Overview
  ☆46Updated this week
• datacarpentry / genomics-r-intro
  Intro to R and RStudio for Genomics
  ☆28Updated this week
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆69Updated last year
• microbiome / mia
  Microbiome analysis
  ☆52Updated this week
• widdowquinn / ten_great_papers
  Ten great papers for wet lab biologists starting out in computational biology
  ☆50Updated 5 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆66Updated last year
• datacarpentry / cloud-genomics
  Introduction to Cloud Computing for Genomics
  ☆21Updated this week
• kyclark / bioinformatics_primer
  Bioinformatics with Unix, bash, Make, Python, and parallel
  ☆21Updated 4 years ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆71Updated last week
• ngs-docs / angus
  Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
  ☆106Updated 2 years ago
• biodatascience / compbio_src
  Introduction to Computational Biology - source Rmarkdown files
  ☆54Updated 3 months ago
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆111Updated last year
• Bioconductor / BiocWorkshops
  2018 Bioconductor Workshops
  ☆75Updated 5 years ago
• ejfertig / NSFBiosketch
  R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch
  ☆38Updated 7 years ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 5 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 5 years ago
• const-ae / tidygenomics
  Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/
  ☆103Updated 3 years ago
• LinkageIO / Camoco
  Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
  ☆41Updated last year
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆40Updated 3 months ago
• pinin4fjords / shinyngs
  Shiny apps for NGS etc based on reusable components created using Shiny modules
  ☆76Updated last month
• bioinformatics-core-shared-training / IntroductionToStats
  Refresher training course on the foundations of statistical analysis. http://tinyurl.com/cruk-stats
  ☆38Updated 3 months ago
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆37Updated 5 years ago
• rsh249 / bioinformatics
  An Introductory Undergraduate course in Bioinformatics
  ☆45Updated 3 years ago
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆143Updated 2 months ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year