Alternatives and similar repositories for alignmentviewer

Users that are interested in alignmentviewer are comparing it to the libraries listed below

• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆60Updated 4 years ago
• sanderlab / AlignmentViewer2.0
  ☆23Updated last year
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 2 months ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated 4 months ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆51Updated 11 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated 2 months ago
• HadrienG / taxadb
  locally query the ncbi taxonomy
  ☆40Updated 2 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated last month
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆34Updated last year
• petercim / ClusterFinder
  Predicting biosynthetic gene clusters in genomes
  ☆38Updated 11 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• jcg / d-tailor
  ☆14Updated 6 years ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆35Updated last week
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆24Updated 2 years ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆17Updated last year
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆16Updated 4 years ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 5 months ago
• MoriarityLab / EditR
  EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
  ☆32Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆32Updated 2 years ago
• mariodosreis / tai
  The tRNA adaptation index
  ☆18Updated 4 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆21Updated 5 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 2 months ago
• mmcco / RepeatScout
  The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…
  ☆16Updated 2 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆33Updated 2 years ago
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆19Updated 6 months ago