sanderlab / alignmentviewerLinks
Multiple sequence alignment visualizer
☆30Updated 2 years ago
Alternatives and similar repositories for alignmentviewer
Users that are interested in alignmentviewer are comparing it to the libraries listed below
Sorting:
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- ☆24Updated last year
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- Python bindings for the TaxonKit library☆40Updated 3 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆55Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Generation and update of protein families☆20Updated this week
- Deep learning embedding for nucleotide sequences☆19Updated 6 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 8 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Nanopore Plasmid Sequencing☆33Updated 2 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated last week
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 6 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- ORFFinder in Python☆15Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆28Updated last month
- ☆27Updated 5 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 7 months ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago