Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.
☆27Feb 13, 2025Updated last year
Alternatives and similar repositories for ASAP
Users that are interested in ASAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆13Sep 19, 2017Updated 9 years ago
- functions to analyse sanger sequencing reads in R☆109May 6, 2026Updated 5 months ago
- Sanger sequencing toolkit: chromatogram visualization, mutation calling, QC, base-calling, trimming, assembly and export (CLI + Python + …☆27Oct 24, 2026Updated last week
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆126Oct 22, 2026Updated last week
- ☆16Jun 30, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Di…☆23Oct 13, 2026Updated 2 weeks ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 4 years ago
- CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.☆48May 5, 2026Updated 5 months ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Aug 10, 2026Updated 2 months ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 5 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆32Apr 9, 2025Updated last year
- flu utilities☆12Feb 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Aug 29, 2012Updated 14 years ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 4 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated last month
- Variant call verification☆19May 12, 2025Updated last year
- An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.☆14Updated this week
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- ☆23Sep 28, 2026Updated last month
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 8 months ago
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆16Apr 5, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆37Oct 19, 2026Updated last week
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 6 months ago
- The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens☆10Apr 6, 2026Updated 6 months ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated 2 years ago
- Wide and Deep Neural Net for predicting TB resistance from genotypic data☆15Dec 9, 2019Updated 6 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆37Jun 30, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- my bin directory☆45Apr 7, 2026Updated 6 months ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 9 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- Add biological annotations to variants in a given VCF file.☆33Apr 4, 2026Updated 6 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆38May 21, 2024Updated 2 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆22Oct 8, 2025Updated last year
- Profiling NTM WGS data☆19Oct 24, 2026Updated last week