mims-harvard / MedeaLinks
Medea: An omics AI agent for therapeutic discovery
☆34Updated last week
Alternatives and similar repositories for Medea
Users that are interested in Medea are comparing it to the libraries listed below
Sorting:
- Claude Code skills for protein design☆76Updated last week
- PocketDTA☆37Updated 2 months ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutation☆12Updated last year
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆28Updated 3 months ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated last year
- Deep learning tools for peptide substrate prediction and generation☆35Updated 2 months ago
- [Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interac…☆27Updated 3 weeks ago
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆34Updated last week
- ☆11Updated last year
- This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Li…☆16Updated 8 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆73Updated 10 months ago
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆40Updated 2 months ago
- This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025☆35Updated 7 months ago
- protein folding app running on modal☆17Updated last month
- Prediction of compound synthesis accessibility bashed on reaction knowledge graph☆18Updated 3 years ago
- ☆13Updated 8 months ago
- AutoML system for building trustworthy peptide bioactivity predictors☆36Updated last week
- Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction☆19Updated last year
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆97Updated 4 months ago
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆197Updated 4 months ago
- ☆21Updated last year
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Updated 2 years ago
- ChemBERTa-3 Repo☆28Updated 3 weeks ago
- ☆25Updated 8 months ago
- A comprehensive Model Context Protocol (MCP) server for accessing the PubChem chemical database. This server provides access to over 110 …☆31Updated last month
- ☆44Updated last year
- Code for peptide ligand design with machine learning models.☆29Updated last year
- DrugGPT: A GPT-based Strategy for Designing Potential Ligands Targeting Specific Proteins☆122Updated 11 months ago
- In-house inpainting pipeline (Rfdiffusion>ProteinMPNN>AF2)☆17Updated last year
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Updated 2 years ago