Alternatives and similar repositories for ShinyFUNKI

Users that are interested in ShinyFUNKI are comparing it to the libraries listed below

• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆17Updated last year
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆16Updated last week
• ocbe-uio / DIscBIO
  A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
  ☆13Updated 2 years ago
• pwwang / biopipen
  A set of processes/pipelines for bioinformatics
  ☆13Updated this week
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆28Updated 2 years ago
• unistbig / netGO
  R/Shiny package for network-integrated pathway enrichment analysis
  ☆13Updated 5 years ago
• ed-lau / jcast
  Junction centric alternative splicing translator
  ☆21Updated 3 years ago
• pnnl / leapR
  ☆18Updated last week
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 7 months ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆27Updated last year
• abbvie-external / OmicNavigator
  Open-Source Software for Omic Data Analysis and Visualization
  ☆40Updated this week
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• liuhong-jia / scAnno
  ☆25Updated 6 months ago
• PavlopoulosLab / NORMA
  Network annotation visualization
  ☆18Updated 6 months ago
• interactivereport / xOmicsShiny
  xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …
  ☆34Updated 3 weeks ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 7 months ago
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 6 months ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last week
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆20Updated last month
• erhard-lab / price
  Improved Ribo-seq enables identification of cryptic translation events
  ☆16Updated 7 years ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated 2 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• yan-cri / DEApp
  DEAPP shiny App
  ☆30Updated 3 years ago
• ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
  The Cancer bioMarker Prediction Pipeline (CAMPP)
  ☆17Updated 5 years ago
• cwieder / py-ssPA
  Single sample pathway analysis tools for omics data
  ☆13Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆63Updated last month
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆42Updated 3 weeks ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆15Updated 6 months ago