saezlab / ShinyFUNKI
FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phosphoproteomic and metabolomic datasets.
β13Updated 3 years ago
Alternatives and similar repositories for ShinyFUNKI
Users that are interested in ShinyFUNKI are comparing it to the libraries listed below
Sorting:
- PathIntegrate Python package for pathway-based multi-omics data integrationβ16Updated 6 months ago
- πΆ hlabud: HLA genotype analysis in Rβ16Updated last month
- Multi-omics data normalisation, model fitting and visualisation.β25Updated 2 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.β26Updated last year
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Dataβ15Updated 3 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name andβ¦β14Updated 3 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell dataβ10Updated 6 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )β36Updated 3 years ago
- Omics data analysisβ14Updated 2 months ago
- The KEGGgraph package to parse KEGG pathways in R into graph objectsβ13Updated last month
- β27Updated last month
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screeningβ24Updated 8 months ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomicsβ12Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment oβ¦β13Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.β18Updated 3 weeks ago
- Explore the cancer relevance of your gene listβ51Updated 2 months ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.β13Updated 2 weeks ago
- R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.β25Updated 2 weeks ago
- TFregulomeR reveals transcription factorsβ context-specific features and functionsβ16Updated 3 years ago
- β24Updated 2 years ago
- Mean Alterations Using Discrete Expressionβ14Updated last year
- epigenome analysis to rank transcription factorsβ13Updated 5 years ago
- Comparison of Adaptive Immune Receptor Repertoiresβ27Updated 3 months ago
- R tool to analyse and integrate multiple -omics dataβ12Updated 2 weeks ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.β12Updated this week
- Detects hotspot regions for somatic mutations in 3D protein structuresβ2Updated last year
- A collection of useful functions for bioinformatics data analysisβ22Updated 10 months ago
- CellAnnβ12Updated last year
- A GenePattern module for running the ssGSEA methodβ13Updated 2 months ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databasesβ16Updated 6 months ago