DavisLaboratory / standRLinks
Spatial transcriptomics analyses and decoding in R
☆21Updated 3 months ago
Alternatives and similar repositories for standR
Users that are interested in standR are comparing it to the libraries listed below
Sorting:
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- scWGCNA☆60Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last month
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆31Updated 4 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆61Updated 6 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- ☆41Updated 3 weeks ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- ☆17Updated 10 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆39Updated 2 weeks ago
- ☆21Updated 5 years ago
- The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…☆22Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- ☆27Updated 7 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 4 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago