rongstat / meta-visualization
A spectral method for assessing and combining multiple data visualizations
☆49Updated last year
Alternatives and similar repositories for meta-visualization
Users that are interested in meta-visualization are comparing it to the libraries listed below
Sorting:
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 10 months ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆53Updated 7 months ago
- Systematically learn and evaluate manifolds from high-dimensional data☆97Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆21Updated 7 months ago
- TensorFlow-Implementation of Deep Archetypal Analysis☆13Updated 3 years ago
- Single-cell multi-omics integration using Optimal Transport☆43Updated 8 months ago
- ☆61Updated last year
- Spatially aware dimension reduction for spatial transcriptomics.☆48Updated last month
- Maximum mean discrepancy comparisons for single cell profiling experiments☆16Updated 3 years ago
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆15Updated last year
- ☆61Updated 4 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Latent spaces for single cells☆21Updated last year
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆30Updated last year
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- ☆19Updated 2 years ago
- ☆33Updated 3 years ago
- Create PyTorch Datasets from AnnData☆20Updated 2 months ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 2 months ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆35Updated 2 months ago
- Explaining dimensionality results using SHAP values☆54Updated 4 months ago
- ☆20Updated 3 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated 10 months ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated last year
- Here we address the global structure preservation by tSNE and UMAP☆48Updated 5 years ago