Alternatives and similar repositories for meta-visualization

Users that are interested in meta-visualization are comparing it to the libraries listed below

• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 11 months ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 9 months ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 3 years ago
• sunericd / dynamicviz
  ☆61Updated 5 months ago
• pachterlab / MCML
  ☆33Updated 3 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆65Updated 11 months ago
• scottyler89 / umap_tsne_experiment
  Testing if UMAP/tSNE overfit their intrinsic dimensionality
  ☆15Updated last year
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆99Updated last year
• OzetteTech / comparative-embedding-visualization
  A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.
  ☆44Updated 7 months ago
• berenslab / contrastive-ne
  Contrastive neighbor embeddings
  ☆54Updated 3 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year
• Genentech / sVAE
  ☆63Updated last year
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• shangll123 / SpatialPCA
  Spatially aware dimension reduction for spatial transcriptomics.
  ☆50Updated 3 months ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• sunericd / TISSUE
  TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …
  ☆30Updated last year
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated 2 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 4 months ago
• AIH-SGML / mixmil
  Code for the paper: Mixed Models with Multiple Instance Learning
  ☆20Updated 2 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆45Updated 9 months ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated 3 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆35Updated 7 months ago
• berenslab / ne-spectrum
  Attraction-Repulsion Spectrum in Neighbor Embeddings
  ☆31Updated 2 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• TissUUmaps / TissUUmapsCore
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆22Updated 2 years ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆28Updated 2 years ago