uhlerlab / cross-modal-autoencodersLinks
☆56Updated 3 years ago
Alternatives and similar repositories for cross-modal-autoencoders
Users that are interested in cross-modal-autoencoders are comparing it to the libraries listed below
Sorting:
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆70Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆61Updated last week
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆74Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- ☆53Updated 4 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 3 months ago
- ☆87Updated last year
- ☆36Updated last month
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆127Updated last week
- Learning cell communication from spatial graphs of cells☆114Updated last year
- ☆58Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 9 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆125Updated 6 months ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆56Updated last year
- ☆153Updated 11 months ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆37Updated 3 years ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆54Updated 5 months ago
- Reproducing the experiments of the DestVI paper☆22Updated 3 years ago
- ☆39Updated last year
- Spatial Single-Cell Analysis Toolkit☆104Updated 5 months ago
- ☆43Updated 4 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆86Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 5 months ago
- ☆127Updated 3 years ago
- ☆66Updated 9 months ago
- ☆64Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 2 years ago