GFA visualization tool - Rust reimplementation of odgi viz
☆15May 2, 2026Updated 5 months ago
Alternatives and similar repositories for gfalook
Users that are interested in gfalook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 6 months ago
- online variation graph induction☆12Oct 21, 2025Updated last year
- Enumerating bubbles in pangenome graphs☆16Oct 19, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 2 weeks ago
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- ☆12Updated this week
- implicit pangenome graph☆114Updated this week
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Methylation analysis pipeline for genome graph☆17May 25, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jun 29, 2021Updated 5 years ago
- ANI based satellite annotation☆31Aug 6, 2026Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 9 months ago
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated 2 months ago
- ☆10Jan 20, 2026Updated 9 months ago
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 3 years ago
- Utilities to manipulate pangenome collections using multi-MUMs☆20Sep 16, 2026Updated last month
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reference bias measuring toolkit☆22Mar 12, 2026Updated 7 months ago
- COsine SImilarity-based Genotyper using pangenomes☆40Oct 12, 2026Updated 2 weeks ago
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated last month
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- EMBO Practical Pangenomics Course 2026☆17Jun 22, 2026Updated 4 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 8 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Oct 21, 2026Updated last week
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Sep 9, 2026Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago