Alternatives and similar repositories for docker-builds

Users that are interested in docker-builds are comparing it to the libraries listed below

• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆163Updated 2 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆141Updated 2 weeks ago
• wdecoster / chopper
  ☆205Updated last week
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆165Updated 3 weeks ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆172Updated last week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆207Updated last month
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆245Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆200Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆239Updated 4 years ago
• HadrienG / InSilicoSeq
  A sequencing simulator
  ☆203Updated last month
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆239Updated 2 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆318Updated 4 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆192Updated 2 weeks ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆170Updated last month
• cbg-ethz / V-pipe
  V-pipe is a pipeline designed for analysing NGS data of short viral genomes
  ☆138Updated 2 weeks ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆140Updated last year
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆139Updated last month
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆217Updated this week
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆158Updated last week
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆249Updated last year
• andersen-lab / ivar
  iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
  ☆124Updated last week
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆149Updated last week
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆261Updated last month
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆203Updated 11 months ago
• inab / trimal
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
  ☆217Updated this week
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 2 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated 9 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆266Updated last month
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆138Updated 3 years ago
• jtlovell / GENESPACE
  ☆213Updated 6 months ago