Dockerfiles and documentation on tools for public health bioinformatics
β224Jun 23, 2026Updated last week
Alternatives and similar repositories for docker-builds
Users that are interested in docker-builds are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UPHL's Reference Free Pipelineβ29May 22, 2026Updated last month
- 𧬠π» TOSTADAS β Toolkit for Open Sequence Triage, Annotation and DAtabase Submissionβ29Mar 10, 2026Updated 3 months ago
- β27Aug 2, 2023Updated 2 years ago
- Assembly of Nanopore Sequencingβ17May 21, 2026Updated last month
- Reference-based consensus creationβ61Jun 23, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python Toolkit for using containerized programs in either Singularity or Dockerβ30Mar 19, 2024Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health conβ¦β63Updated this week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, esβ¦β42Aug 5, 2024Updated last year
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolatesβ91Mar 10, 2026Updated 3 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositoriesβ40Feb 20, 2026Updated 4 months ago
- A simple pipeline for bacterial assembly and quality controlβ16Jun 18, 2026Updated 2 weeks ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.β16Jun 22, 2026Updated last week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.β10Jun 9, 2026Updated 3 weeks ago
- π₯π¦π₯PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogensβ107Jun 25, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libraβ¦β15Feb 27, 2024Updated 2 years ago
- Bacterial surveillance pipeline.β28Updated this week
- Assemble bacterial isolate genomes from Nanopore readsβ134Jan 22, 2025Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolatesβ14Aug 26, 2024Updated last year
- Output FASTQ summary statistics in JSON formatβ29Oct 30, 2022Updated 3 years ago
- β63Jun 3, 2026Updated 3 weeks ago
- Influenza genome analysis Nextflow workflowβ32Sep 15, 2025Updated 9 months ago
- emm Automatic Isolate Labellerβ14Mar 25, 2025Updated last year
- Β΅binfie blogβ19Jul 21, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.β35Dec 2, 2024Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigationsβ26Aug 26, 2024Updated last year
- Standard database for the TBProfiler toolβ30Jun 23, 2026Updated last week
- β10Apr 16, 2025Updated last year
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.β20Mar 25, 2026Updated 3 months ago
- β24Feb 2, 2026Updated 5 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), witβ¦β91Nov 8, 2023Updated 2 years ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structureβ179Apr 22, 2026Updated 2 months ago
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS dataβ135Apr 16, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Antibiotic resistance prediction in minutesβ118Mar 27, 2026Updated 3 months ago
- Extract subsets of ONT (Nanopore) reads based on timeβ24Sep 12, 2024Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.β151Jun 24, 2026Updated last week
- Fasten toolkit, for streaming operations on fastq filesβ82Oct 24, 2025Updated 8 months ago
- Quasitools is a collection of tools for analysing viral quasispecies data.β27Nov 25, 2021Updated 4 years ago
- Scan contig files against PubMLST typing schemesβ288Jun 17, 2026Updated 2 weeks ago
- A flexible pipeline for complete analysis of bacterial genomesβ518May 21, 2026Updated last month