Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.
☆22Aug 17, 2020Updated 5 years ago
Alternatives and similar repositories for WSI-GTFE
Users that are interested in WSI-GTFE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Aug 17, 2020Updated 5 years ago
- Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysis☆16Nov 28, 2022Updated 3 years ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- ☆72Jun 15, 2021Updated 5 years ago
- A graph-transformer for whole slide image classification☆182Jun 17, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆18Aug 9, 2022Updated 3 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36May 18, 2021Updated 5 years ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆59Oct 12, 2021Updated 4 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Apr 28, 2021Updated 5 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆172May 14, 2024Updated 2 years ago
- ☆10Jan 9, 2025Updated last year
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆113Jun 9, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Jan 18, 2023Updated 3 years ago
- ☆11Jul 18, 2022Updated 4 years ago
- [MICCAI2023] XSurv: Merging-Diverging Hybrid Transformer Networks for Survival Prediction☆12Oct 2, 2023Updated 2 years ago
- MuRCL: Multi-instance Reinforcement Contrastive Learning for Whole Slide Image Classification☆29Dec 16, 2021Updated 4 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 4 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆25Oct 11, 2021Updated 4 years ago
- Code for replicating results presented in the paper: "Quantifying Explainers of Graph Neural Networks in Computational Pathology"☆44May 19, 2021Updated 5 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆328Aug 22, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆514Jun 7, 2024Updated 2 years ago
- [ESWA 2023] Implementation of DSCA: A Dual-stream Network with Cross-attention on Whole-Slide Image Pyramids for Cancer Prognosis☆22Apr 24, 2024Updated 2 years ago
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 4 years ago
- ☆24Aug 25, 2022Updated 3 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆55Apr 2, 2023Updated 3 years ago
- ☆21Jun 3, 2024Updated 2 years ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆68Nov 3, 2022Updated 3 years ago
- ☆46Apr 12, 2023Updated 3 years ago
- A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…☆25Oct 21, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆54Feb 2, 2024Updated 2 years ago
- Single Cell Consensus Clustering with Speed☆24Dec 12, 2022Updated 3 years ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆57Dec 10, 2024Updated last year
- Pipeline for computational pathology☆41Jan 4, 2024Updated 2 years ago
- [TMI'2021][ISBI MoNuSAC'2020] 11th place solution to Multi-organ nuclei segmentation and classification challenge.☆32Jun 12, 2021Updated 5 years ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 4 years ago
- ☆19Jul 4, 2023Updated 3 years ago