owkin / HE2RNA_codeLinks
Train a model to predict gene expression from histology slides.
☆107Updated 3 years ago
Alternatives and similar repositories for HE2RNA_code
Users that are interested in HE2RNA_code are comparing it to the libraries listed below
Sorting:
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- A pan-cancer platform for mutation prediction from routine histology☆69Updated 4 years ago
- Deep learning on histopathology images.☆130Updated 4 years ago
- Scripts for data processing☆46Updated last year
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆71Updated 8 months ago
- ☆49Updated 3 years ago
- ☆33Updated 2 years ago
- GrandQC tool for tissue detection and quality control in pathology☆65Updated 6 months ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆228Updated 2 years ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- First commit☆63Updated 3 years ago
- ☆31Updated 4 years ago
- A Python library for deep learning on whole-slide images☆54Updated 3 years ago
- HCC_Deep_learning☆19Updated 5 years ago
- ☆46Updated 3 years ago
- ☆100Updated 4 months ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆51Updated last year
- Tools to build deep learning pipelines.☆109Updated 10 months ago
- Her2 Breast Cancer Project☆87Updated 2 years ago
- ☆20Updated 2 years ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆43Updated 9 months ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆40Updated 4 months ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆174Updated 3 years ago
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆68Updated 11 months ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆59Updated last year
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆24Updated 2 years ago
- ☆20Updated 2 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year