Train a model to predict gene expression from histology slides.
☆111Jul 6, 2022Updated 4 years ago
Alternatives and similar repositories for HE2RNA_code
Users that are interested in HE2RNA_code are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Dec 17, 2020Updated 5 years ago
- A pan-cancer platform for mutation prediction from routine histology☆68May 23, 2021Updated 5 years ago
- ☆59Jan 18, 2022Updated 4 years ago
- Data and code to accompany our Nature publication☆49May 3, 2022Updated 4 years ago
- Deep learning on histopathology images.☆149Sep 8, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆32Mar 15, 2024Updated 2 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆103Jul 1, 2019Updated 7 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆327Aug 22, 2022Updated 4 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆274Dec 23, 2023Updated 2 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆123Jan 24, 2025Updated last year
- ☆14Apr 28, 2024Updated 2 years ago
- Open source tools for computational pathology - Nature BME☆1,747Apr 14, 2025Updated last year
- [CVPR'23] Histopathology Whole Slide Image Analysis with Heterogeneous Graph Representation Learning☆94Aug 25, 2023Updated 3 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆749Oct 27, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python toolkit for pathology image analysis algorithms.☆489Sep 28, 2026Updated last week
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 4 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆169Jan 29, 2024Updated 2 years ago
- MOMA☆52Mar 14, 2024Updated 2 years ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆59Oct 12, 2021Updated 4 years ago
- ☆22Apr 16, 2022Updated 4 years ago
- ☆21Jun 3, 2024Updated 2 years ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆51May 8, 2025Updated last year
- ☆20Apr 8, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆252Feb 7, 2023Updated 3 years ago
- Classification of Lung cancer slide images using deep-learning☆537Sep 24, 2024Updated 2 years ago
- ☆63Apr 26, 2022Updated 4 years ago
- ☆11Jun 25, 2024Updated 2 years ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆54Mar 24, 2026Updated 6 months ago
- Code for ST_IGI package☆35Jul 10, 2025Updated last year
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆68Oct 26, 2024Updated last year
- Histopathology Image Analysis☆95Jul 6, 2023Updated 3 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆84Feb 4, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆519Jun 7, 2024Updated 2 years ago
- Survival Convolutional Neural Networks☆67Apr 2, 2023Updated 3 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆133May 29, 2025Updated last year
- A multi-instance learning on pathological images to predict MSI☆14Sep 30, 2020Updated 6 years ago
- Convolutional neural networks for extracting a "deep stroma score" from histological images of human cancer☆17Apr 16, 2020Updated 6 years ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆185Apr 1, 2022Updated 4 years ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆28Mar 20, 2024Updated 2 years ago