Alternatives and similar repositories for DeepHistology

Users that are interested in DeepHistology are comparing it to the libraries listed below

• ilmaro8 / Multiple_Instance_Learning_instance_based

  View on GitHub
  ☆16Jan 18, 2023Updated 3 years ago
• gerstung-lab / PC-CHiP

  View on GitHub
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆77Dec 17, 2020Updated 5 years ago
• huiqu18 / GeneMutationFromHE

  View on GitHub
  Gene mutation and pathway activity prediction from H&E slides
  ☆35Feb 4, 2022Updated 4 years ago
• drmaxchen-gbc / HCC-deep-learning

  View on GitHub
  HCC_Deep_learning
  ☆19Jun 8, 2020Updated 5 years ago
• owkin / HE2RNA_code

  View on GitHub
  Train a model to predict gene expression from histology slides.
  ☆112Jul 6, 2022Updated 3 years ago
• KatherLab / preProcessing

  View on GitHub
  ☆46Apr 12, 2023Updated 2 years ago
• jnkather / MSIfromHE

  View on GitHub
  predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer
  ☆102Jul 1, 2019Updated 6 years ago
• KatherLab / deepmed

  View on GitHub
  ☆50May 9, 2022Updated 3 years ago
• yufu2015 / PC-CHiP

  View on GitHub
  Pan-cancer quantitative histopathology analysis using deep learning
  ☆12Mar 1, 2022Updated 3 years ago
• isfj / GPDBN

  View on GitHub
  ☆12Feb 23, 2021Updated 4 years ago
• KatherLab / HIA

  View on GitHub
  Histopathology Image Analysis
  ☆93Jul 6, 2023Updated 2 years ago
• alonalj / PathoMCH

  View on GitHub
  ☆22Apr 16, 2022Updated 3 years ago
• jnkather / deep-stroma-histology

  View on GitHub
  Convolutional neural networks for extracting a "deep stroma score" from histological images of human cancer
  ☆17Apr 16, 2020Updated 5 years ago
• YashSharma / C2C

  View on GitHub
  Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
  ☆59Oct 12, 2021Updated 4 years ago
• Path-AI / hif2gene

  View on GitHub
  Data and code to accompany our Nature publication
  ☆48May 3, 2022Updated 3 years ago
• mdsatria / MultiAttentionMIL

  View on GitHub
  ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"
  ☆13Apr 8, 2023Updated 2 years ago
• XSLiuLab / PC_CNA_signature

  View on GitHub
  Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/
  ☆13May 17, 2021Updated 4 years ago
• ncoudray / DeepPATH

  View on GitHub
  Classification of Lung cancer slide images using deep-learning
  ☆527Sep 24, 2024Updated last year
• markowetzlab / pathml

  View on GitHub
  A Python library for deep learning on whole-slide images
  ☆52Nov 5, 2021Updated 4 years ago
• guillaumejaume / tuto-dl-on-graphs

  View on GitHub
  ☆14Oct 29, 2020Updated 5 years ago
• mahmoodlab / PORPOISE

  View on GitHub
  Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
  ☆234Feb 7, 2023Updated 3 years ago
• histocartography / athena

  View on GitHub
  Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets
  ☆12May 3, 2022Updated 3 years ago
• KatherLab / STAMP

  View on GitHub
  Solid Tumor Associative Modeling in Pathology
  ☆110Updated this week
• mahmoodlab / PathomicFusion

  View on GitHub
  Fusing Histology and Genomics via Deep Learning - IEEE TMI
  ☆331Aug 22, 2022Updated 3 years ago
• bryanhe / ST-Net

  View on GitHub
  Deep learning on histopathology images.
  ☆140Sep 8, 2021Updated 4 years ago
• TissueImageAnalytics / tiatoolbox

  View on GitHub
  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
  ☆504Updated this week
• taliq / TEA-graph

  View on GitHub
  First commit
  ☆65Jul 5, 2022Updated 3 years ago
• MSKCC-Computational-Pathology / MIL-nature-medicine-2019

  View on GitHub
  ☆346Nov 21, 2021Updated 4 years ago
• secrierlab / HistoMIL

  View on GitHub
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆29May 21, 2024Updated last year
• Sage-Bionetworks / crcsc

  View on GitHub
  CRC Subtyping Consortium
  ☆13Jun 1, 2018Updated 7 years ago
• hdcouture / ImageMIL

  View on GitHub
  ☆18Jun 24, 2019Updated 6 years ago
• DigitalSlideArchive / HistomicsTK

  View on GitHub
  A Python toolkit for pathology image analysis algorithms.
  ☆465Jan 12, 2026Updated last month
• radxtools / collageradiomics

  View on GitHub
  Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by meas…
  ☆20Aug 14, 2023Updated 2 years ago
• shahcompbio / spectrum-tme

  View on GitHub
  Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
  ☆24May 10, 2025Updated 9 months ago
• deroneriksson / python-wsi-preprocessing

  View on GitHub
  Python Whole Slide Image Preprocessing
  ☆299Nov 15, 2022Updated 3 years ago
• zhaoxuanma / Deeplearning-digital-pathology

  View on GitHub
  Full package for applying deep learning to virtual slides.
  ☆72Sep 7, 2018Updated 7 years ago
• mahmoodlab / CLAM

  View on GitHub
  Open source tools for computational pathology - Nature BME
  ☆1,601Apr 14, 2025Updated 9 months ago
• TissueImageAnalytics / TILAb-Score

  View on GitHub
  This repository contains the implementation of TILAb-score as described in the original paper.
  ☆18Oct 3, 2019Updated 6 years ago
• digitalpathologybern / hover_next_inference

  View on GitHub
  Inference code for HoVer-NeXt
  ☆46Oct 26, 2025Updated 3 months ago