ttriche / bayesCCLinks
Bayesian Consensus Clustering, packaged up from code by Eric F. Lock
☆19Updated 2 years ago
Alternatives and similar repositories for bayesCC
Users that are interested in bayesCC are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 6 months ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- ☆19Updated 7 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆10Updated 7 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 weeks ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Use gene expression to predict phenotype sample information☆19Updated 7 years ago
- Independent Hypothesis Weighting☆15Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- Core utilities for single-cell RNA-seq☆12Updated 2 months ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- Archived version of RUVSeq☆8Updated 8 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago