ttriche / bayesCC

Related projects: ⓘ

• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆23Updated last year
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 3 months ago
• StoreyLab / terastructure
  TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…
  ☆47Updated 4 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• TimothyTickle / single_cell_analysis
  Introduction to single-cell RNA-Seq analysis workshop
  ☆15Updated 7 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated 2 months ago
• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 6 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆40Updated 3 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated 4 months ago
• PMBio / limix
  We have moved to https://github.com/limix/limix.
  ☆23Updated 7 years ago
• leekgroup / phenopredict
  Use gene expression to predict phenotype sample information
  ☆19Updated 6 years ago
• tengfei-emory / QuantNorm
  Mitigating the adverse impact of batch effects in sample pattern detection
  ☆9Updated 4 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆47Updated 5 years ago
• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆20Updated 3 years ago
• linzx06 / AC-PCA
  AC-PCA: simultaneously performs dimension reduction and adjustment for confounding variation
  ☆13Updated 3 years ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 5 years ago
• davidaknowles / eagle
  An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…
  ☆21Updated 2 years ago
• ibn-salem / sevenC
  7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
  ☆12Updated 5 years ago
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 5 years ago
• kieranrcampbell / pseudogp
  Probabilistic pseudotime for single-cell RNA-seq data
  ☆10Updated 6 years ago
• Avsecz / concise
  CONCISE (COnvolutional neural Networks for CIS-regulatory Elements)
  ☆6Updated 6 years ago
• stephenslab / rss
  RSS: Regression with Summary Statistics
  ☆50Updated this week
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆14Updated 2 months ago
• kokrah / HTShape
  Shape analysis of high-throughput data
  ☆19Updated 8 years ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 5 years ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 6 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• drisso / archive-RUVSeq
  Archived version of RUVSeq
  ☆8Updated 7 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago