ttriche / bayesCCLinks
Bayesian Consensus Clustering, packaged up from code by Eric F. Lock
☆19Updated 2 years ago
Alternatives and similar repositories for bayesCC
Users that are interested in bayesCC are comparing it to the libraries listed below
Sorting:
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆49Updated 5 years ago
- ☆19Updated 8 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 weeks ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 7 months ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Use gene expression to predict phenotype sample information☆19Updated 7 years ago
- RSS: Regression with Summary Statistics☆50Updated 10 months ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Normalization for single cell RNA-seq data☆48Updated last month
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- ☆10Updated 7 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Decomposition of heterogeneous DNA methylomes☆23Updated last year
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago