Alternatives and similar repositories for SNFtool:

Users that are interested in SNFtool are comparing it to the libraries listed below

• cran / SNFtool
   This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion
  ☆18Updated 3 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆38Updated 3 months ago
• andreaskapou / BPRMeth
  Modelling DNA methylation profiles
  ☆22Updated 4 years ago
• nicococo / scRNA
  Python framework for single-cell RNA-seq clustering with special focus on transfer learning.
  ☆18Updated 5 years ago
• theislab / Covid_meta_analysis
  Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…
  ☆24Updated 4 years ago
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆53Updated 4 months ago
• saorisakaue / GREP
  GREP: Genome for REPositioning drugs
  ☆37Updated 2 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆49Updated 3 months ago
• cantinilab / momix-notebook
  ☆64Updated last year
• wkl1990 / Illumina450K-methylation
  From IDAT to beta.
  ☆25Updated 6 years ago
• akoch8 / mexpress
  MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.
  ☆13Updated 4 years ago
• alberto-valdeolivas / RandomWalkRestartMH
  A package to perform Random Walk with Restart on different types of networks
  ☆20Updated last year
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆42Updated last year
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 5 years ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 7 years ago
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆105Updated last year
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆35Updated 3 years ago
• srp33 / ShinyLearner
  ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms
  ☆18Updated 3 years ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆40Updated 2 years ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 4 years ago
• sbenz / Paradigm
  PAthway Representation and Analysis by Direct Inference on Graphical Models
  ☆44Updated 6 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆27Updated 9 months ago
• KechrisLab / SmCCNet
  A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.
  ☆26Updated 9 months ago
• danro9685 / CIMLR
  Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s…
  ☆17Updated last year
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆37Updated 6 years ago
• cognoma / cancer-data
  TCGA data acquisition and processing for Project Cognoma
  ☆20Updated 6 years ago
• selbouhaddani / OmicsPLS
  R package for High dimensional data analysis and integration with O2PLS!
  ☆32Updated 2 years ago
• giannarelli-lab / Single-Cell-Immune-Profiling-of-Atherosclerotic-Plaques
  Immune Profiling of Atherosclerotic Plaques Identifies
  ☆9Updated last year