maxconway / SNFtoolLinks
Similarity Network Fusion
☆32Updated 9 years ago
Alternatives and similar repositories for SNFtool
Users that are interested in SNFtool are comparing it to the libraries listed below
Sorting:
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 8 months ago
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆21Updated 4 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated 10 months ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆54Updated 9 months ago
- ☆22Updated 5 years ago
- ☆66Updated last year
- Multi-omics studies are available here☆51Updated 3 years ago
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆13Updated 4 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Updated 4 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆111Updated 2 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- Source code for integrative nonnegative matrix factorization☆19Updated 7 years ago
- ☆19Updated 4 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Human cortical cell types☆24Updated 5 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆119Updated 6 years ago
- Modelling DNA methylation profiles☆23Updated 5 years ago
- Python API for Xena Hub☆53Updated 2 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- Code for preparing and running the imageCCA method.☆20Updated 7 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Updated last year
- PaNeV: an R package for a pathway-based network visualization☆10Updated 3 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 6 years ago
- TCGA data acquisition and processing for Project Cognoma☆20Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago