maxconway / SNFtool
Similarity Network Fusion
☆31Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for SNFtool
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆18Updated 3 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆38Updated last month
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆25Updated 7 months ago
- A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.☆26Updated 7 months ago
- Code for preparing and running the imageCCA method.☆20Updated 7 years ago
- ☆17Updated 3 years ago
- Modelling DNA methylation profiles☆21Updated 4 years ago
- ☆55Updated 4 years ago
- ☆14Updated last year
- ☆62Updated last year
- reverse gene expression score☆12Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated last month
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆101Updated 5 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆109Updated 3 weeks ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- Single-cell exploratory data analysis for RNA-Seq☆39Updated 3 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 2 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆45Updated 6 years ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆35Updated 4 years ago
- ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms☆18Updated 2 years ago
- ☆10Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆26Updated this week
- Multi-omics studies are available here☆51Updated 2 years ago
- ☆34Updated 8 years ago
- Brain Cell Type Specific Gene Expression Analysis☆14Updated 10 months ago