maxconway / SNFtoolLinks
Similarity Network Fusion
☆37Updated 10 years ago
Alternatives and similar repositories for SNFtool
Users that are interested in SNFtool are comparing it to the libraries listed below
Sorting:
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆24Updated 4 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆22Updated 6 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆66Updated 2 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆58Updated last year
- Source code for integrative nonnegative matrix factorization☆19Updated 7 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆66Updated 2 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated this week
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆14Updated 5 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Updated 2 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- ☆56Updated 5 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 4 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 3 months ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago
- ☆14Updated 7 months ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆114Updated 3 months ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Updated 2 years ago
- ☆60Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 6 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated 2 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year