maxconway / SNFtool
Similarity Network Fusion
☆32Updated 9 years ago
Alternatives and similar repositories for SNFtool:
Users that are interested in SNFtool are comparing it to the libraries listed below
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆20Updated 3 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 6 months ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆24Updated 4 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆53Updated 8 months ago
- A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.☆28Updated last year
- Creating multi-resolution embeddings and clusters from high dimensional data☆53Updated 7 months ago
- ☆19Updated 4 years ago
- ☆65Updated last year
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- GREP: Genome for REPositioning drugs☆41Updated 2 years ago
- ☆20Updated 3 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- Source code for integrative nonnegative matrix factorization☆18Updated 6 years ago
- Code for preparing and running the imageCCA method.☆20Updated 7 years ago
- ☆55Updated 5 years ago
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆13Updated 4 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- ☆19Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- reverse gene expression score☆14Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Modelling DNA methylation profiles☆23Updated 4 years ago
- Human cortical cell types☆24Updated 5 years ago
- A package to perform Random Walk with Restart on different types of networks☆21Updated 2 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- Brain Cell Type Specific Gene Expression Analysis☆15Updated last year