Alternatives and similar repositories for MSIfromHE

Users that are interested in MSIfromHE are comparing it to the libraries listed below

• mahmoodlab / TOAD
  AI-based pathology predicts origins for cancers of unknown primary - Nature
  ☆174Updated 3 years ago
• schaugf / HEnorm_python
  H&E histopathological staining normalization
  ☆109Updated 5 years ago
• ysbecca / py-wsi
  Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…
  ☆163Updated last year
• jgamper / compay-syntax
  Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
  ☆55Updated 2 years ago
• MEDAL-IITB / Fast_WSI_Color_Norm
  Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology
  ☆76Updated 5 years ago
• wangxiaodong1021 / HCC_Prognostic
  Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning
  ☆45Updated 4 years ago
• MSKCC-Computational-Pathology / MIL-nature-medicine-2019
  ☆345Updated 3 years ago
• deroneriksson / python-wsi-preprocessing
  Python Whole Slide Image Preprocessing
  ☆292Updated 2 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆69Updated 2 years ago
• MarvinLer / tcga_segmentation
  Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
  ☆140Updated 4 years ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated 2 years ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆70Updated 2 years ago
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆71Updated 8 months ago
• jnkather / DeepHistology
  A pan-cancer platform for mutation prediction from routine histology
  ☆69Updated 4 years ago
• zizhaozhang / nmi-wsi-diagnosis
  Pathologist-level interpretable whole-slide cancer diagnosis with deep learning
  ☆133Updated 6 years ago
• gerstung-lab / PC-CHiP
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆77Updated 4 years ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆73Updated 8 months ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆107Updated 3 years ago
• sedab / PathCNN
  Pathology image classifier architecture
  ☆13Updated 5 years ago
• zhaoxuanma / Deeplearning-digital-pathology
  Full package for applying deep learning to virtual slides.
  ☆69Updated 7 years ago
• mahmoodlab / PathomicFusion
  Fusing Histology and Genomics via Deep Learning - IEEE TMI
  ☆320Updated 3 years ago
• TissueImageAnalytics / TILAb-Score
  This repository contains the implementation of TILAb-score as described in the original paper.
  ☆18Updated 6 years ago
• lyndonchan / hsn_v1
  HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)
  ☆94Updated 5 years ago
• PingjunChen / tissueloc
  Whole Slide Digital Pathology Image Tissue Localization
  ☆45Updated 2 years ago
• tabibusairam / Pan-Renal-cancer
  ☆11Updated 6 years ago
• PathologyDataScience / SCNN
  Survival Convolutional Neural Networks
  ☆68Updated 2 years ago
• CODAIT / deep-histopath
  A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge
  ☆208Updated 6 years ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆35Updated last year
• huiqu18 / GeneMutationFromHE
  Gene mutation and pathway activity prediction from H&E slides
  ☆35Updated 3 years ago
• taliq / TEA-graph
  First commit
  ☆63Updated 3 years ago