jnkather / MSIfromHE
predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer
☆103Updated 5 years ago
Alternatives and similar repositories for MSIfromHE:
Users that are interested in MSIfromHE are comparing it to the libraries listed below
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆75Updated 4 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆171Updated 3 years ago
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆130Updated 5 years ago
- Pathology image classifier architecture☆12Updated 5 years ago
- ☆47Updated 2 years ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆42Updated 4 years ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆87Updated 5 years ago
- Re-stained whole slide image alignment☆32Updated last year
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆129Updated 3 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆160Updated 7 months ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆27Updated 4 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 4 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆67Updated last month
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- H&E histopathological staining normalization☆107Updated 5 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆68Updated last year
- Histopathology Image Analysis☆92Updated last year
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆24Updated 10 months ago
- Scripts for data processing☆40Updated 8 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆54Updated 3 weeks ago
- Survival Convolutional Neural Networks☆68Updated last year
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Updated 3 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 2 years ago
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning☆36Updated 3 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 2 years ago