DeepSEA implements in PyTorch
☆25Jun 5, 2019Updated 6 years ago
Alternatives and similar repositories for PyDeepSEA
Users that are interested in PyDeepSEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepSEA in TensorFlow☆31May 24, 2017Updated 8 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆16Mar 15, 2026Updated 3 weeks ago
- SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction☆20Jan 8, 2020Updated 6 years ago
- Build DeepSea training dataset from raw data☆31Jul 6, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- Classification of 6 viruses including covid-19 based on their DNA sequences using Transformers☆18Apr 18, 2023Updated 2 years ago
- ☆24Dec 20, 2022Updated 3 years ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 3 months ago
- ☆25Aug 20, 2024Updated last year
- DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)☆26Oct 22, 2020Updated 5 years ago
- Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495☆12Oct 12, 2020Updated 5 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆29Mar 12, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- ☆23Jun 24, 2022Updated 3 years ago
- DeepSEA (Bioinformatics) implemented by tensorflow.☆23Jan 15, 2020Updated 6 years ago
- ☆16Mar 31, 2026Updated last week
- ☆11Sep 4, 2025Updated 7 months ago
- This sample code demonstrates how to build an Amazon SageMaker environment for HPO using Optuna (an open source hyperparameter tuning fra…☆11May 21, 2024Updated last year
- 🚬前端自动化测试理论到实战☆12Apr 20, 2021Updated 4 years ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- This is for the AI enzyme design course☆16Nov 10, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆14Dec 10, 2018Updated 7 years ago
- Energy-based Graph Convolutional Networks for Scoring Protein Docking Models☆12Aug 31, 2021Updated 4 years ago
- ☆18Jun 20, 2025Updated 9 months ago
- ☆13Nov 1, 2023Updated 2 years ago
- ☆19May 30, 2025Updated 10 months ago
- ☆17Jan 2, 2025Updated last year
- ☆16Mar 1, 2025Updated last year
- DeepSoluE☆17Sep 18, 2023Updated 2 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆32Feb 1, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆12Nov 15, 2018Updated 7 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆73Apr 28, 2023Updated 2 years ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆21Jan 3, 2026Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆64Mar 20, 2026Updated 3 weeks ago
- ☆13Jul 12, 2022Updated 3 years ago
- ☆12Dec 10, 2024Updated last year
- ☆17Sep 16, 2021Updated 4 years ago