Alternatives and similar repositories for Bioinfor-DeepSEA

Users that are interested in Bioinfor-DeepSEA are comparing it to the libraries listed below

• GenerTeam / GENERator
  GENERator: A Long-Context Generative Genomic Foundation Model
  ☆425Updated 3 weeks ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated last month
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆75Updated last year
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆82Updated 3 years ago
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• louzounlab / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 4 years ago
• GuoBioinfoLab / TCellSI
  The First Innovative Tool to Comprehensively Assess T Cell States
  ☆107Updated 4 months ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆103Updated 2 years ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆27Updated 2 years ago
• brianpenghe / Bio-Jobs
  A list of positions (mostly biology-related) open to apply
  ☆35Updated 2 months ago
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆102Updated last year
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆64Updated last year
• xialab-ahu / MLBP
  Identifying bioactive peptide function using multi-label deep learning
  ☆9Updated 3 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆105Updated 2 years ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆95Updated 4 months ago
• lingxusb / Riboformer
  ☆20Updated last month
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆79Updated last month
• Machine-Learning-Class / Machine-learning
  欢迎来到机器学习理论与方法课程
  ☆60Updated 4 years ago
• holab-hku / MTtrans
  ☆9Updated last year
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆82Updated 2 weeks ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆128Updated 5 months ago
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆85Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆34Updated 3 years ago
• ZjGaothu / EpiGePT
  EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
  ☆27Updated 3 weeks ago
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆93Updated 11 months ago
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆68Updated last week
• XWangLabTHU / NeuronMotif
  NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
  ☆15Updated 2 years ago
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• liwenran / DeepTACT
  DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning
  ☆20Updated 4 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 3 months ago