Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tuning them on personal genome and transcriptome data.
☆19Mar 15, 2026Updated 4 months ago
Alternatives and similar repositories for finetuning-enformer
Users that are interested in finetuning-enformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 11 months ago
- ☆25Aug 20, 2024Updated last year
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12May 9, 2026Updated 2 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated last year
- ☆16Oct 21, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 7 years ago
- ☆34Jan 27, 2025Updated last year
- The official repository for the ARSENAL model☆16Jul 3, 2026Updated 3 weeks ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated last year
- Signed LD profile regression code☆19Aug 1, 2025Updated 11 months ago
- Analyses related to the Borzoi paper.☆29Dec 14, 2025Updated 7 months ago
- Large language model Mistral for DNA☆24Sep 12, 2025Updated 10 months ago
- ☆29Dec 15, 2025Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PARM: Promoter Activity Regulatory Model☆24Apr 22, 2026Updated 3 months ago
- Code to produce syntactic representations that can be used to study syntax processing in the human brain☆12Nov 22, 2021Updated 4 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated last month
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- [NPJ AI] A foundation model for individual genome modelling☆27May 9, 2026Updated 2 months ago
- DOSA: Differentiable Model-Based One-Loop Search for DNN Accelerators☆20Oct 10, 2024Updated last year
- Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics☆13Aug 7, 2020Updated 5 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated last year
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆13Dec 20, 2025Updated 7 months ago
- AlphaGenome PyTorch port☆151Updated this week
- ☆16Sep 13, 2024Updated last year
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year
- CCB Skills Seminar (Fall 2023) - snakemake☆19Oct 16, 2023Updated 2 years ago
- ☆20Nov 17, 2025Updated 8 months ago
- AD regulome analysis☆16Apr 4, 2023Updated 3 years ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆334Jun 12, 2026Updated last month
- ☆13Jan 23, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code repo for paper on Generative Adversarial Networks for Medical Imaging☆11Mar 20, 2020Updated 6 years ago
- ☆52Mar 22, 2026Updated 4 months ago
- ☆19May 30, 2026Updated last month
- A collection of implementations of fair ML algorithms☆12Jan 7, 2018Updated 8 years ago
- Code and dataset for SNP2Vec paper☆21May 12, 2023Updated 3 years ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- Single-Cell Plant Generative Pre-trained model☆16Jan 28, 2026Updated 5 months ago