jisraeli / DeepSEALinks
Training and testing of DeepSEA models.
☆15Updated 10 years ago
Alternatives and similar repositories for DeepSEA
Users that are interested in DeepSEA are comparing it to the libraries listed below
Sorting:
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 10 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 9 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- ☆51Updated 2 years ago
- ☆13Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 6 years ago
- Understanding sequence conservation with deep learning☆20Updated 8 years ago
- ☆32Updated 6 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Signed LD profile regression code☆19Updated 5 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- ☆14Updated 5 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 3 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- 3D hotspot mutation proximity analysis tool☆51Updated 2 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 9 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Updated 4 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 7 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆59Updated last year