Alternatives and similar repositories for DeepSEA:

Users that are interested in DeepSEA are comparing it to the libraries listed below

• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 5 years ago
• jimmyyhwu / deepsea
  DeepSEA in TensorFlow
  ☆29Updated 7 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 9 years ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• Dongwon-Lee / lsgkm
  ☆50Updated last year
• yifeng-li / DECRES
  Deep learning for identifying cis-regulatory elements and other applications
  ☆33Updated 8 years ago
• uci-cbcl / DeepCons
  Understanding sequence conservation with deep learning
  ☆20Updated 8 years ago
• pinellolab / haystack_bio
  Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆47Updated 2 years ago
• zhangyan32 / HiCPlus
  ☆31Updated 5 years ago
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 5 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• wenjiegroup / BiRen
  ☆12Updated 5 years ago
• ma-compbio / PEP
  ☆14Updated 4 years ago
• SchulzLab / EpigenomicsTutorial-ISMB2017
  Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
  ☆14Updated 4 years ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆33Updated 7 years ago
• kundajelab / deepbind
  I have put my modified version of the deepbind code here.
  ☆8Updated 9 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated last year
• jw156605 / MATCHER
  MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…
  ☆21Updated 7 years ago
• martinjzhang / single_cell_eb
  Empirical Bayes methods for single cell data
  ☆15Updated 4 years ago
• yakirr / sldp
  Signed LD profile regression code
  ☆17Updated 3 weeks ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆47Updated last year
• greenelab / adage
  Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …
  ☆61Updated 8 years ago
• davidaknowles / eagle
  An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…
  ☆21Updated 3 years ago
• bioFAM / slalom
  ☆28Updated 2 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 9 months ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• seqcode / miniMDS
  ☆29Updated 8 months ago