Alternatives and similar repositories for SPEID

Users that are interested in SPEID are comparing it to the libraries listed below

• krishnanlab / GenePlexus
  Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
  ☆10Updated 4 years ago
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆14Updated 9 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• JieZheng-ShanghaiTech / HiCoEx
  A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
  ☆12Updated 2 years ago
• ma-compbio / MATCHA
  multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
  ☆29Updated 3 years ago
• HarveyYan / RNATracker
  Prediction of mRNA subcellular localization using deep recurrent neural networks
  ☆15Updated 6 years ago
• Pandaman-Ryan / AgentBind
  ☆14Updated last year
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• xypan1232 / IPMiner
  Predicting ncRNA-protein interaction using high-level features based on deep learning
  ☆15Updated 5 years ago
• mhorlacher / rbpnet
  ☆18Updated last year
• wangshenguiuc / set2gaussian
  code repo for Set2Gaussian
  ☆16Updated 5 years ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated 5 months ago
• noambar / SerumMetabolomePredictions
  ☆21Updated 4 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 9 months ago
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆11Updated 5 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• kundajelab / ENCODE_scatac
  ☆11Updated 2 years ago
• ma-compbio / CTCF-MP
  ☆12Updated 5 years ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆38Updated 8 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• jianlin-cheng / DeepGRN
  Deep learning for modeling gene regulatory network
  ☆22Updated 4 years ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 5 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆38Updated 7 months ago
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated last year
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 4 years ago
• rpmccordlab / SMILE
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Updated 2 years ago