Alternatives and similar repositories for SPEID

Users that are interested in SPEID are comparing it to the libraries listed below

• krishnanlab / GenePlexus
  Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
  ☆10Updated 4 years ago
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆15Updated 10 months ago
• HarveyYan / RNATracker
  Prediction of mRNA subcellular localization using deep recurrent neural networks
  ☆15Updated 6 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• goodarzilab / SwitchFinder
  ☆19Updated last year
• Pandaman-Ryan / AgentBind
  ☆14Updated last year
• mhorlacher / rbpnet
  ☆18Updated last year
• kundajelab / ENCODE_scatac
  ☆11Updated 2 years ago
• suinleelab / PAUSE
  Code for paper "Principled feature attribution for unsupervised gene expression analysis"
  ☆12Updated 2 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago
• JieZheng-ShanghaiTech / HiCoEx
  A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
  ☆12Updated 2 years ago
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 5 years ago
• fratajcz / speos
  A positive-unlabeled ensemble learning framework for disease gene prioritization.
  ☆20Updated 2 months ago
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆11Updated 5 years ago
• ma-compbio / CTCF-MP
  ☆12Updated 5 years ago
• ma-compbio / MATCHA
  multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
  ☆29Updated 3 years ago
• xypan1232 / IPMiner
  Predicting ncRNA-protein interaction using high-level features based on deep learning
  ☆15Updated 5 years ago
• wangshenguiuc / set2gaussian
  code repo for Set2Gaussian
  ☆16Updated 5 years ago
• xiongxslab / Translatomer
  ☆24Updated 4 months ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated 6 months ago
• jianlin-cheng / DeepGRN
  Deep learning for modeling gene regulatory network
  ☆22Updated 4 years ago
• arefeen / DeepPASTA
  ☆10Updated 5 years ago
• XinmingTu / Awesome-Bio-ML-PKU
  This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking Unive…
  ☆16Updated 6 years ago
• JanZrimec / DeepExpression
  ☆33Updated 3 years ago
• noambar / SerumMetabolomePredictions
  ☆21Updated 4 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• rpmccordlab / SMILE
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Updated 2 years ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago