ma-compbio / SPEID
☆14Updated 7 years ago
Alternatives and similar repositories for SPEID:
Users that are interested in SPEID are comparing it to the libraries listed below
- Code for reproducing the Sei manuscript results☆15Updated 2 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆29Updated 2 years ago
- Deep learning for modeling gene regulatory network☆22Updated 3 years ago
- Knowledge-primed neural networks☆35Updated last year
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆16Updated 3 years ago
- repository containing analysis scripts and auxiliary files☆30Updated 4 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆11Updated 2 years ago
- ☆17Updated 9 months ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Updated 3 years ago
- ☆16Updated 3 weeks ago
- ☆11Updated 2 years ago
- ☆13Updated 4 months ago
- ☆14Updated 6 months ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 2 months ago
- ☆18Updated 2 years ago
- ☆26Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆16Updated 6 months ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆11Updated last year
- Promoter activity measurement and modeling; artificial promoter design and testing☆12Updated last year
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 8 months ago
- ☆10Updated 4 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆38Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ☆11Updated 4 years ago
- ☆20Updated 2 years ago
- ☆21Updated last week
- HLA-II ligand predictor.☆38Updated last year
- ☆18Updated last year