kundajelab / tfmodiscoLinks
TF MOtif Discovery from Importance SCOres
☆148Updated this week
Alternatives and similar repositories for tfmodisco
Users that are interested in tfmodisco are comparing it to the libraries listed below
Sorting:
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆166Updated last week
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 8 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆84Updated 2 weeks ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- Biological sequence analysis for the modern age.☆250Updated 3 weeks ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆179Updated 3 weeks ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆79Updated last year
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆92Updated 7 months ago
- A python extension for quick access to bigWig and bigBed files☆234Updated 8 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆49Updated last month
- deep learning-inspired explainable sequence model for transcription initiation☆96Updated 7 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 3 weeks ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆67Updated 2 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆237Updated 3 months ago
- ☆32Updated 8 months ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks☆84Updated last year
- ☆94Updated 4 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 6 months ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆119Updated 3 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆228Updated 5 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆75Updated 3 weeks ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆196Updated 3 months ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆247Updated 5 months ago