The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
☆39Aug 16, 2023Updated 3 years ago
Alternatives and similar repositories for chromoformer
Users that are interested in chromoformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆56Updated this week
- ☆13Jul 26, 2022Updated 4 years ago
- The Supplementary data in the paper "A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction"☆12Sep 27, 2019Updated 7 years ago
- The official code implementation for DREAMwalk in Python.☆31Jul 28, 2023Updated 3 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33Dec 2, 2022Updated 3 years ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆32Feb 21, 2023Updated 3 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆13May 9, 2026Updated 5 months ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆86Oct 20, 2026Updated 2 weeks ago
- ☆14Jan 23, 2025Updated last year
- ☆38Jan 27, 2025Updated last year
- MMCLKin, an attention consistency-guided multimodal and multiscale contrastive learning framework for efficient and accurate prediction o…☆10Oct 8, 2025Updated last year
- ☆30May 15, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Collections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)☆11May 16, 2026Updated 5 months ago
- [CVPR 2024] Improving out-of-distribution generalization in graphs via hierarchical semantic environments☆13Apr 17, 2025Updated last year
- ☆12Jun 16, 2023Updated 3 years ago
- ☆10May 31, 2023Updated 3 years ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆575Jun 26, 2026Updated 4 months ago
- UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.☆13Mar 4, 2026Updated 8 months ago
- ☆13Apr 7, 2023Updated 3 years ago
- code to run sei and obtain sei and sequence class predictions☆119Dec 20, 2022Updated 3 years ago
- Interface-aware molecular generative framework for protein-protein interaction modulators☆21Dec 22, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This is a topological deep learning extension to the ProteinWorkshop framework for protein structure representation learning. This librar…☆13Dec 22, 2025Updated 10 months ago
- ☆12Feb 6, 2023Updated 3 years ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Oct 6, 2026Updated 3 weeks ago
- ☆18Oct 21, 2024Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Oct 26, 2026Updated last week
- ☆33Oct 27, 2021Updated 5 years ago
- RNA-seq prediction with deep convolutional neural networks.☆269Sep 30, 2026Updated last month
- [Bioinformatics, 2023] Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆18Apr 9, 2024Updated 2 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆31Apr 1, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆14Sep 25, 2026Updated last month
- Training and testing of DeepSEA models.☆16Oct 19, 2015Updated 11 years ago
- Highly accurate discovery of terpene synthases powered by machine learning☆18Sep 15, 2026Updated last month
- CytoGenetic Pattern Sleuth (CytoGPS) is a software tool to parse semi-structured ISCN-based karyotypes in text formats. This Java-based s…☆11Aug 31, 2021Updated 5 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆46Jul 3, 2025Updated last year
- TF MOtif Discovery from Importance SCOres☆198Oct 16, 2026Updated 2 weeks ago