dohlee / chromoformerLinks
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
☆36Updated last year
Alternatives and similar repositories for chromoformer
Users that are interested in chromoformer are comparing it to the libraries listed below
Sorting:
- ☆34Updated last month
- Computational Optimization of DNA Activity (CODA)☆60Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆59Updated last week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆42Updated 8 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- ☆74Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆53Updated 3 years ago
- surrogate quantitative interpretability for deepnets☆23Updated last week
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆32Updated 2 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆17Updated last month
- HLA-II ligand predictor.