TXiang-lab / blupADC
blupADC:An useful tool for animal and plant breeding
☆27Updated 5 months ago
Alternatives and similar repositories for blupADC:
Users that are interested in blupADC are comparing it to the libraries listed below
- ☆24Updated 4 years ago
- ☆34Updated 3 years ago
- lme4 for Genomic Selection☆17Updated 4 years ago
- Perform GWAS using the FarmCPU model.☆23Updated 4 months ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- https://filippob.github.io/introduction_to_gwas/☆20Updated 10 months ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆12Updated 7 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆36Updated last month
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆13Updated 2 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- ☆13Updated 2 years ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆11Updated 7 years ago
- Using genome-wide markers for polyploid breeding☆11Updated 4 months ago
- Added functions for Echidna in R☆11Updated 2 years ago
- Repository for code used for publications☆28Updated 4 months ago
- ☆12Updated 4 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆23Updated 5 months ago
- QTL mapping with binmap data☆18Updated 5 years ago
- GWAS software that can handle autopolyploids☆28Updated 6 months ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆13Updated last year
- Data Simulation for Life Science and Breeding☆37Updated 2 weeks ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- ☆40Updated 2 years ago
- Perform GWAS with gemma in a simple pipeline☆26Updated last week
- ☆21Updated 6 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated last month
- HIBLUP is an Integration of Statistical Methods Under BLUP Framework for Genomic Selection and Prediction☆28Updated 3 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated 8 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 4 months ago