JiejunShi / CAMDA
Quantify the Concurrence of DNA Methylation and De-methylation
☆8Updated 2 years ago
Alternatives and similar repositories for CAMDA:
Users that are interested in CAMDA are comparing it to the libraries listed below
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆13Updated 4 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- ☆17Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated 7 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- ☆12Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆10Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- ☆16Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆11Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- ☆13Updated 6 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- ☆10Updated 3 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆24Updated last year