AlexandrovLab / SigProfilerTopographyLinks
SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes.  SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures. 
☆21Updated 2 months ago
Alternatives and similar repositories for SigProfilerTopography
Users that are interested in SigProfilerTopography are comparing it to the libraries listed below
Sorting:
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
 - Scripts used for the ACT paper☆12Updated 4 years ago
 - ☆11Updated 2 years ago
 - CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
 - Toolkit for single-cell copy number analysis☆24Updated 3 months ago
 - West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
 - Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
 - Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
 - Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
 - Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 3 years ago
 - Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
 - R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
 - ☆17Updated 2 years ago
 - ☆26Updated 2 years ago
 - SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆15Updated 3 months ago
 - ☆12Updated 2 years ago
 - ☆21Updated this week
 - This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
 - Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
 - Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
 - Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 months ago
 - Easy Copy Number !☆21Updated 2 months ago
 - ☆18Updated 4 years ago
 - Somatic indel discovery tool for tumor RNA-Seq data.☆23Updated last month
 - Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
 - ☆11Updated 7 years ago
 - Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆14Updated last year
 - ☆12Updated 6 years ago
 - Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 7 months ago
 - Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago