Alternatives and similar repositories for SigProfilerTopography

Users that are interested in SigProfilerTopography are comparing it to the libraries listed below

• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• nghiavtr / FuSeq_WES
  ☆12Updated 2 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 4 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆14Updated last month
• mckellardw / STRS
  Suite of analysis tools for spatial total RNA-sequencing
  ☆12Updated 2 years ago
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆16Updated 5 years ago
• amf71 / ECLIPSE
  ☆11Updated 2 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆25Updated last year
• slagtermaarten / LOHHLA
  Fork of https://bitbucket.org/mcgranahanlab/lohhla
  ☆17Updated 5 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 5 months ago
• Wedge-lab / dpclust
  Dirichlet Process based methods for subclonal reconstruction of tumours
  ☆29Updated 5 months ago
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 2 months ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• navinlabcode / copykit
  Toolkit for single-cell copy number analysis
  ☆24Updated 2 months ago
• FJD-CEPH / aCNViewer
  Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
  ☆29Updated 6 years ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆17Updated last year
• luisgls / SOPRANO
  SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions
  ☆11Updated last year
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• ijuric / MAPS
  ☆19Updated 2 years ago
• gustaveroussy / EaCoN
  Easy Copy Number !
  ☆21Updated 2 weeks ago
• ZhaozzReal / IPAFinder
  Systematic analyses of intronic polyadenylation from standard RNAseq data
  ☆13Updated last year
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 5 years ago